PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s655861g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 447aa    MW: 49125 Da    PI: 7.9967
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s655861g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.1e-32118176160
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        ldDgynWrKYGqK+vkgse+prsYY+Ct+++Cp kkk+e+s  d++++ei+Y+g Hnh+k
  PDK_30s655861g002 118 LDDGYNWRKYGQKPVKGSENPRSYYKCTFPNCPRKKKLEKSL-DGQITEIVYKGAHNHPK 176
                        59****************************************.***************85 PP
2WRKY104.17.9e-33282340159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d + v++tYeg+Hnh+
  PDK_30s655861g002 282 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTLGCPVRKHVERASHDLREVITTYEGKHNHD 340
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-29107177IPR003657WRKY domain
PROSITE profilePS5081123.456113177IPR003657WRKY domain
SuperFamilySSF1182901.31E-24114177IPR003657WRKY domain
SMARTSM007743.9E-35118176IPR003657WRKY domain
PfamPF031061.5E-23119175IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-36267342IPR003657WRKY domain
SuperFamilySSF1182905.36E-29274342IPR003657WRKY domain
PROSITE profilePS5081138.09277342IPR003657WRKY domain
SMARTSM007743.4E-38282341IPR003657WRKY domain
PfamPF031062.8E-25283340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGNGGAGGPK FKSMTPPPLP VSPPPLSPSS YFAIPPGLSP REFLDSPVLR SSESDHEKSW  60
NYQQQSDNTN VKAELVAPSR ANYSGILQAN TQANNGGQQS NFSHSTQAAQ TLRGQGTLDD  120
GYNWRKYGQK PVKGSENPRS YYKCTFPNCP RKKKLEKSLD GQITEIVYKG AHNHPKPQST  180
RRNSASSQAF QASGASEASD HSLGAQSGVQ TDSVPTPENS SVSFGDDDLD VSKSGADEFD  240
EDEPDAKLWR KDGENEGISA SGNRTVREPK VVVQTTSDVD ILDDGYRWRK YGQKVVKGNP  300
NPRSYYKCTT LGCPVRKHVE RASHDLREVI TTYEGKHNHD VPAARGSRVR RPLTDNNSSE  360
NNFTMAIRPA AMVNHPNQMT DISLFGSRPN ASGSQAPFTV EMLQTPGSYG FSGFDNLMNS  420
YMNQLEQQQQ GQMEGVFLKA KEEPRDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36103343278Probable WRKY transcription factor 4
2lex_A2e-36103343278Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0783224e-46KR078322.1 Lindera glauca transcription factor WRKY33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792187.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-126WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2H3Y1T60.0A0A2H3Y1T6_PHODC; WRKY transcription factor WRKY24
STRINGXP_008792187.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-108WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]