PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s659121g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 173aa    MW: 19350.2 Da    PI: 4.2592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s659121g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.4e-091361147
                       TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                       r +WT  Ed+ + +a    + g   +W++Ia+ ++ gRt+ ++  ++q +
  PDK_30s659121g001 13 RRAWTRVEDKAFERALVVIPEGtpnRWSLIAAQVP-GRTPRELWQHYQEL 61
                       679********************************.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.591866IPR017930Myb domain
SMARTSM007177.2E-81264IPR001005SANT/Myb domain
SuperFamilySSF466894.86E-121263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-71362IPR009057Homeodomain-like
PfamPF002495.2E-71361IPR001005SANT/Myb domain
CDDcd001671.24E-61562No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEFFSVGGLD EVRRAWTRVE DKAFERALVV IPEGTPNRWS LIAAQVPGRT PRELWQHYQE  60
LVQDLAVIER GMVDTPAEWD DDDDDDEEVD GSSDGSSNHR GPGGLQISFD RRRAPMGDPV  120
DGRGAPVVPG WAGKVWEGRL EEHFEVGGEN KDTDSGCQPC SKVLHPSEPE RWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-141476971RADIALIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808839.14e-75transcription factor DIVARICATA-like
TrEMBLA0A2H3Z6D91e-73A0A2H3Z6D9_PHODC; transcription factor DIVARICATA-like
STRINGXP_008808839.12e-74(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1837922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-14MYB family protein