PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s659141g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family LSD
Protein Properties Length: 169aa    MW: 17759.7 Da    PI: 8.6598
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s659141g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD144.82.1e-14731125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       C+gCr+lL YPrGA++V+Ca+C+t+
  PDK_30s659141g002  7 CNGCRNLLLYPRGATNVCCAICNTI 31
                       ***********************97 PP
2zf-LSD144.42.7e-144670125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       CggCrtlL+Y+rGA  VRCa+C+t+
  PDK_30s659141g002 46 CGGCRTLLMYTRGANGVRCACCNTI 70
                       ***********************97 PP
3zf-LSD146.46.3e-1584108125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        Cg+Cr +L+YP+GApsV+Ca+C+ V
  PDK_30s659141g002  84 CGQCRSTLMYPYGAPSVKCAICHYV 108
                        **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.3E-13434IPR005735Zinc finger, LSD1-type
PfamPF069433.2E-12731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.0E-164372IPR005735Zinc finger, LSD1-type
PfamPF069433.9E-124670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.7E-1281110IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-1384108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MQSQLVCNGC RNLLLYPRGA TNVCCAICNT ITSVPPPGME MSQLVCGGCR TLLMYTRGAN  60
GVRCACCNTI NLARSANQVA HVNCGQCRST LMYPYGAPSV KCAICHYVTN IGASNMRVPI  120
PAARRPNESA VMPSSTSAAQ TVVVENPMTV DESGKLVSNV VVGVATGKK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804686.11e-116protein LSD1-like
RefseqXP_008804687.11e-116protein LSD1-like
SwissprotQ2QMB33e-72LOL2_ORYSJ; Protein LOL2
TrEMBLA0A2H3YW451e-115A0A2H3YW45_PHODC; protein LSD1-like
STRINGXP_008804686.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.71e-68LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]