PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s661971g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

CAMTA

Protein Properties

Length: 182aa MW: 21279.7 Da PI: 8.7972

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s661971g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	47.6	3.1e-15	2	37	46	78
CG-1 46 kvryfrkDGyswkkkkdgktvrEdhekLKvgg...v 78 ++ryfrkDG++w+kkkdgktv+E+he+LK + + PDK_30s661971g001 2 VLRYFRKDGHNWRKKKDGKTVKEAHERLKFLSqilI 37 78***************************8764441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	26.579	1	108	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.0E-5	1	103	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.8E-11	2	37	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MVLRYFRKDG HNWRKKKDGK TVKEAHERLK FLSQILIDYM LKSNLREHVD AGFDEERIND 60 YNRVSRQFPR EVSGKNAPYM ARNQPKAWRD YMHIVLVHYL GVKPFETNLS SIGHDLLFIF 120 LFLECVCFLI TEPELDISLT WAFLTVCFPV TEPELGTQIL SSPKKAKLDF GRMGAPSQVL 180 IE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	3e-15	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains