PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s662981g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 230aa    MW: 24947.1 Da    PI: 9.8164
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s662981g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.1e-08171214243
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                        g W++ Ed+ l++a k ++++   +W++Ia+ ++ g++   c+ r
  PDK_30s662981g002 171 GTWSAAEDLALLNALKAFPKDasmRWEKIASAVP-GKSKACCVKR 214
                        79********************************.**99888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.2565106IPR017877Myb-like domain
SMARTSM007170.05969122IPR001005SANT/Myb domain
SuperFamilySSF466896.8E-771108IPR009057Homeodomain-like
CDDcd001673.00E-472122No hitNo description
SMARTSM007171.5E-5169221IPR001005SANT/Myb domain
SuperFamilySSF466895.07E-9170218IPR009057Homeodomain-like
PfamPF002499.5E-7171214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-6171221IPR009057Homeodomain-like
PROSITE profilePS500906.667171214IPR017877Myb-like domain
CDDcd001672.13E-5172214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MLSTPPVGNL TINERCDGTN QVGTRPPPPP PSGPPSSPVV SSPPISKKPE ERSGDPNSNG  60
SGSAKEVEGE KEWTDEDFEL LKRQILKHPV GEPKRWERIA EAFRGRHGLH SVIKTAKSLS  120
ERKPATGESF QQFLKQRKPL DKRVDAIVGD SKDGILAENG ESRKEDGGGS GTWSAAEDLA  180
LLNALKAFPK DASMRWEKIA SAVPGKSKAC CVKRVAELKR DFRSSKASET
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008799423.11e-143transcription factor MAMYB, partial
SwissprotQ9ASQ22e-50MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A2H3YIS21e-141A0A2H3YIS2_PHODC; transcription factor MAMYB
STRINGXP_008799423.11e-142(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.11e-52MYB_related family protein