PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s663401g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 344aa MW: 38220.8 Da PI: 4.4088

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s663401g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	42.9	1.5e-13	6	82	56	128
NAM 56 kewyfFskrdkkya...tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkge.ktdWvmheyrl 128 ew+fF+++ +k++ ++ r++r+t sg+Wka+ k+vl+++ ++ g k+++ + + + + ge kt W+m+ey++ PDK_30s663401g003 6 WEWFFFASTVRKHPganNSCRASRSTGSGRWKASQGIKTVLDSNLNVLGSKQSFCYMERSPSGGErKTVWLMEEYSI 82 49*******99965556699999*************9*********97655555449******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	24.026	1	111	IPR003441	NAC domain
SuperFamily	SSF101941	4.05E-18	4	111	IPR003441	NAC domain
Pfam	PF02365	3.9E-7	8	82	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MANPDWEWFF FASTVRKHPG ANNSCRASRS TGSGRWKASQ GIKTVLDSNL NVLGSKQSFC 60 YMERSPSGGE RKTVWLMEEY SIPSLRRKAG ASAINGSNKL DDWVICKIYL TPKARKIYVT 120 HEDLPEIQLV NNAPPEPEAK RRRMEDPQTL NLSFMHPSQD IAGHRQILQL PNNFLPPLVD 180 VSGMPIDSYF STQYAGEEPS IPSQDIAVDF FQIHQLADGT LPQSGLTAPV HVEMIEEGPS 240 HVSRLDNLDR SLKDIDAEGS IITFSPNFMQ ASSEETEEIE KMALLLEREI MQAGGEETEN 300 MAASLGEENI QASGEETEEA EEIAALLGSL RDDISMPSID DILH

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MANPDWEWFF FASTVRKHPG ANNSCRASRS TGSGRWKASQ GIKTVLDSNL NVLGSKQSFC  60
YMERSPSGGE RKTVWLMEEY SIPSLRRKAG ASAINGSNKL DDWVICKIYL TPKARKIYVT  120
HEDLPEIQLV NNAPPEPEAK RRRMEDPQTL NLSFMHPSQD IAGHRQILQL PNNFLPPLVD  180
VSGMPIDSYF STQYAGEEPS IPSQDIAVDF FQIHQLADGT LPQSGLTAPV HVEMIEEGPS  240
HVSRLDNLDR SLKDIDAEGS IITFSPNFMQ ASSEETEEIE KMALLLEREI MQAGGEETEN  300
MAASLGEENI QASGEETEEA EEIAALLGSL RDDISMPSID DILH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-14	7	109	72	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-14	7	109	72	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-14	7	109	72	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-14	7	109	72	163	NO APICAL MERISTEM PROTEIN
3swm_A	1e-14	7	109	75	166	NAC domain-containing protein 19
3swm_B	1e-14	7	109	75	166	NAC domain-containing protein 19
3swm_C	1e-14	7	109	75	166	NAC domain-containing protein 19
3swm_D	1e-14	7	109	75	166	NAC domain-containing protein 19
3swp_A	1e-14	7	109	75	166	NAC domain-containing protein 19
3swp_B	1e-14	7	109	75	166	NAC domain-containing protein 19
3swp_C	1e-14	7	109	75	166	NAC domain-containing protein 19
3swp_D	1e-14	7	109	75	166	NAC domain-containing protein 19
4dul_A	1e-14	7	109	72	163	NAC domain-containing protein 19
4dul_B	1e-14	7	109	72	163	NAC domain-containing protein 19

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029118174.1	1e-103	uncharacterized protein LOC114913757
STRING	XP_008802265.1	1e-92	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22917	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	2e-16	NAC domain containing protein 3