PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s663521g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Protein Properties

Length: 213aa MW: 23687.3 Da PI: 10.7466

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s663521g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	103	1.6e-32	42	141	1	96
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kv tpsdv+k++rlv+pk++ae+h + ++ l +ed sg++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v+F +++ PDK_30s663521g001 42 FDKVVTPSDVGKLNRLVIPKQHAEKHfpmeigS-G-SAGMLLNFEDVSGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDVVTFWRSR 131 89************************99743.3.3689***********************************************887 PP SSEE..EEEE CS B3 87 rsefelvvkv 96 e++l++ + PDK_30s663521g001 132 GPEKQLYIDW 141 7777787776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.9E-41	34	147	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.05E-33	40	143	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.35E-28	41	135	No hit	No description
Pfam	PF02362	3.7E-29	42	141	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.071	42	143	IPR003340	B3 DNA binding domain
SMART	SM01019	6.7E-28	42	145	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MLRKHTFCDE LRQSKRAGKA SGSIVGKRSP RSLSVSDRDI LFDKVVTPSD VGKLNRLVIP 60 KQHAEKHFPM EIGSGSAGML LNFEDVSGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKSLK 120 AGDVVTFWRS RGPEKQLYID WKPREAAAAA AFAGRPVAHV QVVRLFGVNI FRTPVGCAAA 180 GGGNDGGAEG KRVREMELFP PEQFLKKQCI GAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	9e-54	39	151	11	124	DNA-binding protein RAV1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269\|PubMed:18718758, ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008799316.1	1e-155	AP2/ERF and B3 domain-containing transcription repressor RAV2-like
Swissprot	P82280	1e-66	RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBL	A0A2H3YIN7	1e-153	A0A2H3YIN7_PHODC; AP2/ERF and B3 domain-containing transcription repressor RAV2-like
STRING	XP_008799316.1	1e-154	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP456	38	203

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	4e-67	related to ABI3/VP1 2

Publications ? help Back to Top
Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S RAV genes: regulation of floral induction and beyond. Ann. Bot., 2014. 114(7): p. 1459-70 [PMID:24812253] Marín-González E, et al. SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures. Plant Physiol., 2015. 169(2): p. 1214-24 [PMID:26243615] Sun YW, et al. Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus. Sci Rep, 2015. 5: p. 16476 [PMID:26602265] Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering. Plant Sci., 2015. 241: p. 78-95 [PMID:26706061] Matías-Hernández L, et al. TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation. Plant Physiol., 2016. 170(3): p. 1624-39 [PMID:26802039] Li P, et al. The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses. Physiol Plant, 2017. 159(4): p. 416-432 [PMID:27747895]