PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s663661g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 243aa    MW: 27177.7 Da    PI: 10.0553
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s663661g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.24.5e-10142162121
                        ---SS-EEEEEEE--TT-SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                        ldDgy+WrKYGqK+vk++++p
  PDK_30s663661g001 142 LDDGYKWRKYGQKVVKNTQHP 162
                        59****************998 PP
2WRKY58.11.7e-181842232059
                        S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        + rsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  PDK_30s663661g001 184 MCRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHS 223
                        68*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-32127223IPR003657WRKY domain
SuperFamilySSF1182907.06E-9134162IPR003657WRKY domain
PROSITE profilePS5081121.953137225IPR003657WRKY domain
SMARTSM007741.1E-30142224IPR003657WRKY domain
PfamPF031061.6E-6143163IPR003657WRKY domain
SuperFamilySSF1182902.09E-14175224IPR003657WRKY domain
PfamPF031061.3E-12184222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGTPHMSFTP QTSPLPHLAF SPYGLQHSLG GDAASHPRET LPSLPLKLRV GGSPQIGASA  60
VQRSSSNSPW PWNEEWSLNN KRSSVGEEHH SNNRNNSGTS NGPSSSINCL SVSALRMKKM  120
KARRKVREPR FCFKTMSEVD VLDDGYKWRK YGQKVVKNTQ HPSLALLNEK APVKGGQVMM  180
SCFMCRSYYR CTQDNCRVKK RVERLAEDPR MVITTYEGRH AHSPSHDEDD TGAAAASQIS  240
FFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-22133222874Probable WRKY transcription factor 4
2lex_A6e-22133222874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793465.11e-161probable WRKY transcription factor 13
SwissprotQ9SVB75e-53WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A2H3Y4U71e-160A0A2H3Y4U7_PHODC; probable WRKY transcription factor 13
STRINGXP_008793465.11e-160(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-46WRKY DNA-binding protein 13