PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s663881g012
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 230aa    MW: 26929.8 Da    PI: 7.9686
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s663881g012genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.2e-091581922155
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        k +yps++++  LA+++gL+++q+ +WF N+R ++
  PDK_30s663881g012 158 KWPYPSEAQKLALAQSTGLDQKQINNWFINQRKRH 192
                        579*****************************885 PP
2ELK39.98.8e-14112133122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK qLlrKYsgyL+sLkqEF+
  PDK_30s663881g012 112 ELKGQLLRKYSGYLSSLKQEFL 133
                        9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037902.7E-7118IPR005540KNOX1
SMARTSM012561.8E-221263IPR005541KNOX2
PfamPF037911.4E-201761IPR005541KNOX2
PROSITE profilePS5121311.226112132IPR005539ELK domain
SMARTSM011881.4E-7112133IPR005539ELK domain
PfamPF037891.5E-10112133IPR005539ELK domain
PROSITE profilePS5007112.86132195IPR001356Homeobox domain
SMARTSM003891.7E-13134199IPR001356Homeobox domain
SuperFamilySSF466894.9E-20134209IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28137197IPR009057Homeodomain-like
CDDcd000862.42E-12144196No hitNo description
PfamPF059202.3E-17152191IPR008422Homeobox KN domain
PROSITE patternPS000270170193IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAHPQYPRLL SAYVNCHKDP ALDQFMEAYC EMLTKYEQEL SKPFKEAMLF LSRIDSQFKS  60
LSLSTPPPPQ VLDWLGLTWC LTLAVLLERN GSSEEEFGAS ENYVDPQAED RELKGQLLRK  120
YSGYLSSLKQ EFLKKRKKGK LPKEARQQLL DWWNRHYKWP YPSEAQKLAL AQSTGLDQKQ  180
INNWFINQRK RHWKPSEEMQ FVVMDTAHPH YFMDNSLGNP FPLDCAPALL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127136LKQEFLKKRK
2133137KKRKK
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8904200.0DQ890420.1 Elaeis guineensis class I KNOX-like 1 protein (KNOX1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927330.11e-137homeobox protein knotted-1-like LET6
SwissprotO222991e-108LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLA5H2371e-136A5H237_ELAGV; Class I KNOX-like 1 protein
STRINGXP_008795979.11e-137(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2107357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.14e-99KNOX/ELK homeobox transcription factor