PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s663881g015

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HB-other

Protein Properties

Length: 254aa MW: 29178.2 Da PI: 9.9606

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s663881g015	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.6	2.7e-10	36	77	17	57
HHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 17 elFek.nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++F+ ++yp++++ ee A+ l+Lt +q+++WF rR kek+ PDK_30s663881g015 36 KCFHFeEKYPKQKALEEYATTLNLTYNQIRTWFVERRRKEKR 77 6788669**********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-10	10	80	IPR009057	Homeodomain-like
SMART	SM00389	3.5E-4	12	82	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.63E-9	21	79	IPR009057	Homeodomain-like
Pfam	PF00046	2.3E-7	36	77	IPR001356	Homeobox domain
PROSITE profile	PS50071	11.888	38	78	IPR001356	Homeobox domain
CDD	cd00086	1.22E-6	39	79	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MGNDDINADK DSKEEDTSPT SITRKILLRF QFASVKCFHF EEKYPKQKAL EEYATTLNLT 60 YNQIRTWFVE RRRKEKRENE ALSNSKSSES VEPESDQSND GALFAVVRHV GPKDERSAPI 120 MCRKDISGQE ELKGPASLIC DELQNPKKKT WLKKRCSAEY STNQLVRHKD RHRISGQQMK 180 NSVGGRMHCA EKKHLIPSPV LFSKDYVLKK VFRKDGPPLG VEFDPPPANA FGYRTGFQIL 240 QSCPDSQKSL KRRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	75	RRRKEK
2	70	77	RRRKEKRE
3	247	253	KSLKRRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008795938.1	1e-150	homeobox-DDT domain protein RLT3-like
TrEMBL	A0A2H3YAK3	1e-148	A0A2H3YAK3_PHODC; homeobox-DDT domain protein RLT3-like
STRING	XP_008795938.1	1e-149	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50