PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s663981g010

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 370aa MW: 42208.2 Da PI: 7.2419

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s663981g010	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.7	4.7e-36	46	188	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 lp+G++F+Ptd+el+ e+L++kv+g+ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ PDK_30s663981g010 46 LPAGVKFDPTDQELI-EHLEAKVKGEAsrshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdl 135 799**********.99***997775553333333666646******.555666799**************75666665 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l PDK_30s663981g010 136 qKGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 188 444788********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-37	42	207	IPR003441	NAC domain
PROSITE profile	PS51005	32.452	46	207	IPR003441	NAC domain
Pfam	PF02365	1.3E-16	47	188	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MNRSHIGSVS SSDLIDAKLE EHRMCGSKQC PSCGHELDGK PDWLGLPAGV KFDPTDQELI 60 EHLEAKVKGE ASRSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSKH FFHRPSKAYT 120 TGTRKRRKIQ TECDLQKGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKHRKPEKTN 180 WVMHQYHLGE LEEEKEGELV VSKIFYQTQP RQCNWSDRSS AAFAPFRKSF DEVGMGETAP 240 KAREEHEEHE HFHTLPQHHH VAQEHQHRQG AFHISRPTNP ISTIISPPPP HPTSIVLDDP 300 YHVSGLLLQT DKFQQQHQQQ QQKLDHRSTS GLEELIMGCT AAGIKGETSI PHSQEWQYSY 360 WSPDNPDHHG

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MNRSHIGSVS SSDLIDAKLE EHRMCGSKQC PSCGHELDGK PDWLGLPAGV KFDPTDQELI  60
EHLEAKVKGE ASRSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSKH FFHRPSKAYT  120
TGTRKRRKIQ TECDLQKGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKHRKPEKTN  180
WVMHQYHLGE LEEEKEGELV VSKIFYQTQP RQCNWSDRSS AAFAPFRKSF DEVGMGETAP  240
KAREEHEEHE HFHTLPQHHH VAQEHQHRQG AFHISRPTNP ISTIISPPPP HPTSIVLDDP  300
YHVSGLLLQT DKFQQQHQQQ QQKLDHRSTS GLEELIMGCT AAGIKGETSI PHSQEWQYSY  360
WSPDNPDHHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-12	44	188	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019707314.1	0.0	NAC domain-containing protein 75 isoform X2
Swissprot	Q9M0F8	1e-136	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A199VIC2	0.0	A0A199VIC2_ANACO; NAC domain-containing protein 73
STRING	XP_010244406.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-129	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]