PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s664141g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 194aa MW: 22140.4 Da PI: 10.0115

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s664141g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	57.3	5.3e-18	25	111	51	128
NAM 51 vkaeekewyfFskrdkkyatgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmheyrl 128 +k++ ++++fF++ +++ya+g+rk+r+ ++ +W++tgk+ +vl+ +g ++g +k+Lv+yk ++ g+ k++Wvmh+y++ PDK_30s664141g002 25 IKKDGSSVHFFHRISNAYASGHRKRRKihddcdksEERVRWHKTGKTIPVLE-NGVHKGWRKILVLYKSSKGGGKpdKANWVMHQYHI 111 45667789****************86777777655899********.999*******7665544333*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	18.354	1	130	IPR003441	NAC domain
SuperFamily	SSF101941	5.36E-21	26	130	IPR003441	NAC domain
Pfam	PF02365	2.3E-6	32	111	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MKESATRIPK ISLVLATKSF FAIGIKKDGS SVHFFHRISN AYASGHRKRR KIHDDCDKSE 60 ERVRWHKTGK TIPVLENGVH KGWRKILVLY KSSKGGGKPD KANWVMHQYH IGTDKDEEDG 120 ELVVSKIFFQ QQAKQIDNSG IDQVNEEPDM FAARAAEWGE RGKMLVWLCC PSFSSALCSL 180 IFRQETGRTR NFCI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008812203.1	4e-91	SUPPRESSOR OF GAMMA RESPONSE 1-like
Swissprot	O49459	8e-40	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A2H3ZDK2	1e-89	A0A2H3ZDK2_PHODC; SUPPRESSOR OF GAMMA RESPONSE 1-like
STRING	XP_008812203.1	2e-90	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2110	37	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	3e-42	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]