PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s667301g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NF-YA
Protein Properties Length: 202aa    MW: 22336.6 Da    PI: 9.7859
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s667301g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA49.61.3e-15168202136
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 
                        +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k rk
  PDK_30s667301g001 168 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKVRK 202
                        69***************************9.88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.0E-4166202IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115221.102167202IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.5E-11169202IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860172192IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MESRADGTNT VDANGQGTLP STINAQPWWR GPGFGVMSPA MLPDSASKSA SVNLPVGGAG  60
NKGGQAQSHD RADGTGDVCK EMQNIGTQRG SRACLSHLYQ LQYQQSLFHI LKCLFGLYVI  120
MKWACPTYSY SDPYFSRIMA PYGTQALVHP QLLGMPYTRM PLPLEMAEEP VYVNAKQYHG  180
ILRRRQSRAK AELEKKVIKV RK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790783.11e-117nuclear transcription factor Y subunit A-1
RefseqXP_008790792.11e-117nuclear transcription factor Y subunit A-1
RefseqXP_026660955.11e-117nuclear transcription factor Y subunit A-1
TrEMBLA0A2H3XYY81e-116A0A2H3XYY8_PHODC; nuclear transcription factor Y subunit A-1
STRINGXP_008790783.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.44e-33nuclear factor Y, subunit A1