PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s667491g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GATA
Protein Properties Length: 192aa    MW: 21930.2 Da    PI: 8.9275
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s667491g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.52.1e-19117151135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++C t +TplWR+gpdg+ tLCnaCG++y++++l
  PDK_30s667491g001 117 CTHCITRETPLWRSGPDGPGTLCNACGIRYKSRRL 151
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-17111165IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-14112152No hitNo description
PROSITE profilePS5011412.4115147IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-15115150IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.51E-14116150No hitNo description
PROSITE patternPS003440117142IPR000679Zinc finger, GATA-type
PfamPF003203.3E-17117151IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MLPVNLNLFS PPFDIDDMLK DVTIEETCDG RLCVPDDPVE DLEWFPALYD DSLVFNLLPN  60
GGDKKSELCD ALTDWEVPKK RRTRQVGRRT WSLDPPERLL YGHLLKDGVH FDMRKKCTHC  120
ITRETPLWRS GPDGPGTLCN ACGIRYKSRR LLPEHQPASR PARGTTGYAA THKKVCKVRR  180
GRKSKKSNGH IY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026664935.11e-137GATA transcription factor 4-like
TrEMBLA0A3Q0IHA11e-136A0A3Q0IHA1_PHODC; GATA transcription factor 4-like
STRINGXP_008805857.11e-114(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.19e-28GATA transcription factor 4