PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s668601g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WOX
Protein Properties Length: 243aa    MW: 25587.1 Da    PI: 7.1125
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s668601g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.62.1e-085996238
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCT CS
           Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklg 38
                       ++R+++++eq+++Le+ F++   +p ++e++++  +l+
  PDK_30s668601g002 59 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRVQLQ 96
                       89*****************99************99985 PP
2Wus_type_Homeobox63.93.2e-2158102246
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkie 46 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+ +L+eyG++ 
  PDK_30s668601g002  58 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVP 102
                        689****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000860.002025895No hitNo description
PfamPF000466.6E-65996IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MASSNRHWPS LFKSKPCNTH HQWQHDINPS SLLSGGCQKT PCTSGIAIPG CEERSPEPKP  60
RWNPKPEQIR ILEAIFNSGM VNPPRDEIRK IRVQLQEYGQ VPQTYCCAPQ ELAGILGAPE  120
QGAGLCSALW SELMGQVGCK RDEDEAKTKA QLHHSFSVGA ATGATVTCVG APVAVTGAAT  180
IVGAADSASP ASPFSEVQGL GGAGVGGATR VTVFINEVAF EVAAGPFNLI ISVQISMYIG  240
GHK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026662814.11e-72WUSCHEL-related homeobox 9-like
TrEMBLA0A3Q0I7P93e-71A0A3Q0I7P9_PHODC; WUSCHEL-related homeobox 9-like
STRINGXP_008798340.15e-69(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.15e-44homeobox-3