PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s668621g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

LBD

Protein Properties

Length: 171aa MW: 19255.2 Da PI: 8.3828

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s668621g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.3	1.3e-43	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +Ca+Ck lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l+++p +r da+sslv+eA+ar+rdPvyG+vg i+ lq+q++ql++ PDK_30s668621g001 6 PCASCKWLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQEIPVYQRADAVSSLVFEANARMRDPVYGCVGAISFLQNQVSQLQT 97 7***************************************************************************************** PP DUF260 93 elallkee 100 +la++++e PDK_30s668621g001 98 QLAMAQAE 105 **9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.37	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MVAGSPCASC KWLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNVSKM LQEIPVYQRA 60 DAVSSLVFEA NARMRDPVYG CVGAISFLQN QVSQLQTQLA MAQAEILCIQ MQQESSMAYQ 120 QMHADGKSFL LHNSINSIPQ FMNFSSGSVV QEPFKIESLR HRHVSLPFFN F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-48	3	107	8	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-48	3	107	8	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008799794.1	1e-125	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-70	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2H3YK29	1e-124	A0A2H3YK29_PHODC; LOB domain-containing protein 12-like
STRING	XP_008799794.1	1e-125	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-73	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]