PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s669462g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 176aa    MW: 18793.3 Da    PI: 8.3884
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s669462g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000371133123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C+k+F++   L  H  +H
  PDK_30s669462g005 11 YECKTCNKCFPSFQALGGHRASH 33
                       99**********99999998887 PP
2zf-C2H214.79.1e-0588110123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++Cg  Fs+   L  H+r+H
  PDK_30s669462g005  88 HECSICGSEFSSGQALGGHMRRH 110
                        78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-91033No hitNo description
PfamPF139124.8E-121035IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.2211138IPR007087Zinc finger, C2H2
SMARTSM003550.0821133IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-983110No hitNo description
Gene3DG3DSA:3.30.160.608.7E-486110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.1E-1287112IPR007087Zinc finger, C2H2
PROSITE profilePS501579.76488110IPR007087Zinc finger, C2H2
SMARTSM003550.0288110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MANGKAGFLV YECKTCNKCF PSFQALGGHR ASHKKPKLAI PMTGTEAKKA AIDEDSLQIS  60
MNSSISKSIM AATNTNSTSI SNNKPRVHEC SICGSEFSSG QALGGHMRRH RPVSIPAATS  120
EPKKERNVNL SLDLNLPAPS DDDHEEVPKS PSAVALAFES KQPLVISASA LVDCHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008779116.11e-125zinc finger protein ZAT5-like
SwissprotQ681X43e-39ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A2H3X6J61e-124A0A2H3X6J6_PHODC; zinc finger protein ZAT5-like
STRINGXP_008779116.11e-125(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-38C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]