PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s670221g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family FAR1
Protein Properties Length: 770aa    MW: 89165.6 Da    PI: 8.5313
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s670221g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.52.3e-2352137190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fY++Y++++GF v+k++s++   +g  +++tf+C k gk++ +  +   ++r++++ rt+Cka++++k ++ +++w+v++l leHnH+l 
  PDK_30s670221g003  52 QFYKAYGYRTGFGVTKRSSHNF--DGIRYRSTFTCCKGGKAKVKPGN---KSRRKPVVRTECKAMMVIKDQHfQNRWVVDDLILEHNHPLD 137
                        6****************99988..9999**************99988...89999**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.9E-2152138IPR004330FAR1 DNA binding domain
PfamPF105511.3E-30258352IPR018289MULE transposase domain
PROSITE profilePS509669.545537573IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-5537569IPR007527Zinc finger, SWIM-type
SMARTSM005750.0015548575IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MAEDEPTLEP HSSPNPATTP QATMHKDAPG SADDGLVPKI GMIFESVDDA FQFYKAYGYR  60
TGFGVTKRSS HNFDGIRYRS TFTCCKGGKA KVKPGNKSRR KPVVRTECKA MMVIKDQHFQ  120
NRWVVDDLIL EHNHPLDPDM VRFMKCFREF PSSVKRKLQI NDDAGMPLDN STTAVSSQGV  180
RNENGSFTKR FCRNHLDKTK KLKLADGDAE ALMEFFENLQ AQNSNFFHSW DWNDEGCLRN  240
VFWADIRARA AYQYFSDVIT FDTMYLTDEY EILFASFVGV NHHGQSVLLG CGLLADETME  300
TYIWLFMKWL TCMNDKPPNA IITDHCKAIA GAVAEVFPHA RHRFCHWHIM KKLPEKLGRM  360
KEAISSKMSK AVYDSLTVND FESEWKEMIE QYHLQDNEWL SSLYEDRRKW VPAYIKDTFW  420
ADMSTSQRGK SMKSFFDGHV TSKTSLKMFL KQYDNTLKGK FEKEAQEDFR SFHTSPQLLS  480
GLEFEKQIAK VYTMNIFLKF QDEVKQLMQC NTNLVDRSGP AATYMVTELT AGRKVDYKVV  540
YNPDEEDVWC ICRSFQFRGI LCRHALCVLR QELVMVLPCK YVLARWRKDF KRLHISASSP  600
HIASMREMRI YDDLYMRAHQ YFVDIVEIGA TDHDLKEFAL TVLKESRDKV IKYAESRSDR  660
RIDDNTPTER PASRKEKAVH NSKKKKNKGP NKEKSTNLGQ VQNTRNTIDT STSVHVQANH  720
PNEAWPMTPI GGPESFGHRV ESIPMDWLLH NPAPYTQWRG NCSFYPSRRM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1017775e-84JX101777.1 Elaeis guineensis putative far-red impaired response protein (FRIP) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775026.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2H3WX550.0A0A2H3WX55_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRINGXP_008775026.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-139FAR1-related sequence 6