PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s670711g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 319aa    MW: 36539.4 Da    PI: 7.7752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s670711g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.3e-18173261197
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +++s+v++  +l lp kf++e+  + + ++ ++lede+g +++  +   +++ +  l++GW+ F+ +++L++gD +vF+l++ ++f  
  PDK_30s670711g005 173 FVKSMLRSHVSSCFWLGLPSKFCKENL-P-PHEMIMVLEDENGLEYDAIY--IGNRTG--LSGGWRAFAMDHKLEDGDALVFELVKPDRF-- 256
                        89*********************9995.3.46689***************..555544..************************987777.. PP

                        EEEEE CS
                 B3  93 vvkvf 97 
                        +v ++
  PDK_30s670711g005 257 KVYII 261
                        77766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-22165262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-25166262IPR015300DNA-binding pseudobarrel domain
CDDcd100175.21E-29171262No hitNo description
PfamPF023626.2E-17173262IPR003340B3 DNA binding domain
PROSITE profilePS5086312.816173264IPR003340B3 DNA binding domain
SMARTSM010195.6E-26173264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MADDKNSYEE IRRQRIQENL KHLEMCWMNG SSEKLRDFER LEVCGVILAT EVEDLGISKI  60
SQCLLEVAKC EYKLLKCHAS PKSKKNLEMT ELRRSSRARN PVPSYRDEKL VLTDDFLGKV  120
GDIDLRSYRK RYSRSDQNGR VYTGRVVSYE EQIGAVQRAE KLQSDLNSNH PSFVKSMLRS  180
HVSSCFWLGL PSKFCKENLP PHEMIMVLED ENGLEYDAIY IGNRTGLSGG WRAFAMDHKL  240
EDGDALVFEL VKPDRFKVYI IKAIESQDSD DRIADVESKG TNISTKAEES VEDSTVSQKP  300
VSNNGSFRRA ERARKRRPG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803014.10.0B3 domain-containing protein Os05g0481400
TrEMBLA0A2H3YS650.0A0A2H3YS65_PHODC; B3 domain-containing protein Os05g0481400
STRINGXP_008803014.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-56B3 family protein