PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s671191g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 119aa    MW: 13414.9 Da    PI: 7.5453
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s671191g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.59.1e-174288455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  PDK_30s671191g001 42 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 88
                       6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-2135100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-213597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.863887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-104183No hitNo description
PfamPF000103.1E-144288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-184493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MATGRQKQPR RVQEEGAEEA EEPAKPVPPR GSGSKRSRAA EVHNLSEKRR RSRINEKMKA  60
LQNLIPNSNK TDKASMLDEA IEYLKQLQLQ VQQLRDALDD EKSPTDNAQV FSSETESGE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017699909.17e-49transcription factor APG
TrEMBLA0A2H3ZU502e-47A0A2H3ZU50_PHODC; transcription factor APG
STRINGXP_002510190.16e-37(Ricinus communis)
STRINGGSMUA_Achr10P09040_0018e-37(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-25phytochrome interacting factor 3