PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s671251g009
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 425aa    MW: 47746.4 Da    PI: 6.7493
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s671251g009genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS234.93.6e-7211641188373
               GRAS  88 sPilkfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAe 170
                        sP+++f+h+taNqaI+ea+e+        + +H+iDfd+s+G+QWp+L+q+L++++  ++p slRiTg+g+    s eel+et+ rL +f +
  PDK_30s671251g009 116 SPFHQFAHFTANQAIMEAFEEGqqrphngRSLHVIDFDVSYGFQWPSLIQSLSDKAtrSKPISLRITGIGR----SIEELRETETRLVNFTK 203
                        9******************9876777777889*********************999856666*********....9**************** PP

               GRAS 171 el.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                         + ++ ++f+ l    l     ++++++++ +l+Vnlv+ l++l  +s +     ++ L +v sl+P +vvvve+e  +   +Fl rf+e+l
  PDK_30s671251g009 204 GCdNLFMKFEGL----LRGSVRSDFKIEKNATLVVNLVFYLQTLR-SSSE----VSDALMAVCSLNPSLVVVVEKEGGRRPCTFLSRFMESL 286
                        9945899****8....55555789*****************9997.3333....3469********************************** PP

               GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllr........k 343
                        +yy+a+fdsl+  lp+es er k+E+  lgrei+ + + e++e  +  + e+  +W+ ++e++GF++++ls++ ++qaklll+        +
  PDK_30s671251g009 287 HYYAAMFDSLNDCLPAESTERLKIEKNHLGREIKIAMTEEEKEegKHLEFERTDTWKGKMESFGFGEIKLSSRSVSQAKLLLKikshlstiE 378
                        **********************************999999998455566789999**************************97322222112 PP

               GRAS 344 vk.sdgyrveee.sgslv.lgWkdrpLvsvSaW 373
                        ++ + g+r+ e+ +g ++ l W+dr L +vSaW
  PDK_30s671251g009 379 HDgGCGFRILERdEGRAIsLAWQDRHLATVSAW 411
                        2223347765443666667************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.8511381IPR005202Transcription factor GRAS
PfamPF035141.2E-69116411IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MQEDIGLEEM LSLNLGISST AKKRKRTEES NVIPCGNLMP DVLDKKFFGL LQSRERMLGL  60
DPRRKGLEDG EGLQLIHLLL ASAAAVDANN TISAIDALHE LYQLVSTNGD PIQRASPFHQ  120
FAHFTANQAI MEAFEEGQQR PHNGRSLHVI DFDVSYGFQW PSLIQSLSDK ATRSKPISLR  180
ITGIGRSIEE LRETETRLVN FTKGCDNLFM KFEGLLRGSV RSDFKIEKNA TLVVNLVFYL  240
QTLRSSSEVS DALMAVCSLN PSLVVVVEKE GGRRPCTFLS RFMESLHYYA AMFDSLNDCL  300
PAESTERLKI EKNHLGREIK IAMTEEEKEE GKHLEFERTD TWKGKMESFG FGEIKLSSRS  360
VSQAKLLLKI KSHLSTIEHD GGCGFRILER DEGRAISLAW QDRHLATVSA WHCVRSPNHS  420
LGCSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3711541286375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12126KKRKRT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781654.10.0DELLA protein RGL2-like
TrEMBLA0A2H3XCB60.0A0A2H3XCB6_PHODC; DELLA protein RGL2-like
STRINGXP_008781654.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.18e-41RGA-like 2