PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s671651g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

LBD

Protein Properties

Length: 245aa MW: 26801.4 Da PI: 4.2253

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s671651g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	33.8	9.3e-11	1	43	58	100
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 m+s++++++ara+dPv G++++il+l++qle+ +aelal+ ++ PDK_30s671651g002 1 MRSIIFQSNARAHDPVGGCYRIILELERQLERDSAELALVLRQ 43 89***********************************998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	3.7E-7	1	39	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	8.824	1	44	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MRSIIFQSNA RAHDPVGGCY RIILELERQL ERDSAELALV LRQLAICRAQ AQAALSPGTA 60 DLGINPNLIL STGDDTGSDA IYGSHQSGLV LPMQQQQQQP QQQQQQYYDY FYYEGGGDNP 120 NGDHHNNNNH SISNSNGING SYNNAGVEME VATSSVLSLH PQQCRVDEEA VKPLVDMFEV 180 RQAFTIGDDD EESAKNFAAT VAEPFQCSGK IELKEELNPI EDVPEHDLKG AASLFTLTNC 240 TSSSI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008779803.2	0.0	LOB domain-containing protein 7-like, partial
TrEMBL	A0A2H3X816	0.0	A0A2H3X816_PHODC; LOB domain-containing protein 7-like
STRING	XP_008779803.1	1e-177	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-11	LOB domain-containing protein 22