PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s672181g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 698aa    MW: 76718 Da    PI: 8.7772
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s672181g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85e-08598647147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r ++T  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  PDK_30s672181g003 598 RRPFTVAEVEALVQAVEKLGTGRWRDVKLRAFqnaKHRTYVDLKDKWKTL 647
                        679***********************9877767**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.904.1E-4404474No hitNo description
PROSITE profilePS500539.069404474IPR000626Ubiquitin domain
SuperFamilySSF542361.26E-6404489IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.175593652IPR017930Myb domain
SMARTSM007171.1E-7597650IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-11598648IPR009057Homeodomain-like
SuperFamilySSF466897.42E-16599680IPR009057Homeodomain-like
CDDcd116603.51E-17599649No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0005515Molecular Functionprotein binding
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MVLQKRLDYG SSGYQVPAMP HVPRSARGKR SVRKKVENNQ MCAFDLLATV AGKLLSERES  60
SLTPCDITGT SNPTTEKDTV KQEQLDNEKP FKTEAFDQGG CDDGTLGSEI ILYRLDSYTS  120
KEHSQTPNAA ASSPASAFIK SDNKDVFAGE SIIRGEFGHS LGTSTTAQKC GARRCSPGSV  180
ESCVCEGDGI KTPLQAERRI TGNLIARSSP DMYSLEDLMD LDAKPPALVS SDSSAEVPPC  240
RDHVPYNSFV PKRRDGMKFS VDRDDDENSS GCTNSSTITN NACKAPCIGD RRIKKLLASK  300
YWKAAPTMST DGELSNTDVE MKPFFRSRRM SCTRQRTQRS SFKRRKLFER CSMSASDGGI  360
FREGISNPPG KGGIKVEASD SPVTLHGGWY RLSYLHVYCP FLSVKLSIKS FKVPELFVEI  420
PQNATVGSLK RTVLEAVTAI LGRGLRVGVL LQGKKVRDDS KTLRQAGISH GEELDNLGFT  480
LEPNPTQAPA PLTSPEDPHL LQPSDAIEPL SRIPPANPTA DQGASDATPQ PVLLTFIANC  540
PESDHDSVHS PADVSYLDKT TANSRALVPV VPPMDVEALA VVPLRKPRHS EMVQRRIRRP  600
FTVAEVEALV QAVEKLGTGR WRDVKLRAFQ NAKHRTYVDL KDKWKTLVHT ARISPQQRRG  660
EPVPQELLDR VLSAHAYWSQ QQARLQVKPP PAETCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-535856894108Telomere binding protein TBP1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937605.10.0telomere repeat-binding protein 2 isoform X2
TrEMBLA0A2H3XJI60.0A0A2H3XJI6_PHODC; telomere repeat-binding protein 2
STRINGXP_008784600.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5245714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-101TRF-like 2