PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s672421g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family LBD
Protein Properties Length: 196aa    MW: 22310.9 Da    PI: 8.5796
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s672421g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260989.4e-3168169496
             DUF260   4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer.........edamsslvyeAearardPvyGavgvilklqqq 86 
                        aCk+lr++C++ C++ pyfp ++p+kfa+vh++FGa+n +k+lk  p+e           eda+ s+vyeA+ar+rdPvyG+v+ i + q q
  PDK_30s672421g001  68 ACKLLRKRCSEACIFIPYFPPTEPEKFAAVHRVFGARNASKMLKVFPTEPSyadipanfrEDAVISMVYEANARLRDPVYGCVASIAAFQIQ 159
                        9*******************************************9977665566677776******************************** PP

             DUF260  87 leqlkaelal 96 
                         +ql+ el  
  PDK_30s672421g001 160 NSQLQRELTN 169
                        *****99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.16564174IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-3168169IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGQIVIGCGQ IHEREDVLDH IQIKPEVIAF FPLEHKYLCF YVRVVPRRAI KLNNHKNLYI  60
LFVNSYIACK LLRKRCSEAC IFIPYFPPTE PEKFAAVHRV FGARNASKML KVFPTEPSYA  120
DIPANFREDA VISMVYEANA RLRDPVYGCV ASIAAFQIQN SQLQRELTNA LAENIALKSQ  180
LSEAQFLLAH LSTSHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-326817314110LOB family transfactor Ramosa2.1
5ly0_B2e-326817314110LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794215.12e-79LOB domain-containing protein 12-like
SwissprotQ8LBW31e-35LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A2H3Y6Y05e-78A0A2H3Y6Y0_PHODC; LOB domain-containing protein 12-like
STRINGXP_008794215.19e-79(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.15e-38LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]