PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s673261g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

E2F/DP

Protein Properties

Length: 555aa MW: 62503.1 Da PI: 5.1555

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s673261g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86	2.9e-27	293	358	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++ll+++++gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg PDK_30s673261g001 293 RYDSSLGLLTKKFINLLKHAQDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 358 6899****************************...99..**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.8E-29	291	360	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	1.4E-34	293	358	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF46785	6.8E-17	293	356	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF02319	2.2E-24	295	358	IPR003316	E2F/DP family, winged-helix DNA-binding domain
CDD	cd14660	2.68E-48	369	475	No hit	No description
SuperFamily	SSF144074	7.85E-35	370	475	No hit	No description
Pfam	PF16421	3.2E-33	374	473	IPR032198	E2F transcription factor, CC-MB domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005667	Cellular Component	transcription factor complex
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MTGGRALGNR SAQQQAGQIF QPLKRHLPFP SVRPPFVAPD EYHRALDFYF RIAETSGSRT 60 RHWGSSSSEE EEDEEERDEG KVPADPTEQE EKPRDPIVSE KPLKITRLPK GLTKPLAKLE 120 VSVVEQLKTF YVPPSQAGKR GTLFYRSTQQ PLWREEMEDP AEYIFERVKI PRYYSPKMKE 180 LLERSGYDLS NRSSLPRVAQ SLATVHQLAG CRAFLKRKPD QEDNEAAESS EWTTSPGYAE 240 AVTSPLLTPV SGKGGRTYGR SKAAKNSKSG PQTPMSNACS PSGNPLTPVG TCRYDSSLGL 300 LTKKFINLLK HAQDGILDLN KAAETLEVQK RRIYDITNVL EGIGLIEKKL KNRIRWKGVD 360 DLRPGELDDD VSNLQAEVEN LSLQERSLDE RISEMRERLR ELTEDENNQK WLYVTEDDIK 420 GVPCFQNETL IAIKAPHGTT LEVPDPDEAG EYPHRRYRIV LRSTMGPIDV YLVSQFEEKF 480 EEMSGVETPP RIPPTSHSAF VENSTVEVVT EESRGKEMAP NVQDNQRMSS DPNASQDFVG 540 GMMKIVPSDV DPVNE

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MTGGRALGNR SAQQQAGQIF QPLKRHLPFP SVRPPFVAPD EYHRALDFYF RIAETSGSRT  60
RHWGSSSSEE EEDEEERDEG KVPADPTEQE EKPRDPIVSE KPLKITRLPK GLTKPLAKLE  120
VSVVEQLKTF YVPPSQAGKR GTLFYRSTQQ PLWREEMEDP AEYIFERVKI PRYYSPKMKE  180
LLERSGYDLS NRSSLPRVAQ SLATVHQLAG CRAFLKRKPD QEDNEAAESS EWTTSPGYAE  240
AVTSPLLTPV SGKGGRTYGR SKAAKNSKSG PQTPMSNACS PSGNPLTPVG TCRYDSSLGL  300
LTKKFINLLK HAQDGILDLN KAAETLEVQK RRIYDITNVL EGIGLIEKKL KNRIRWKGVD  360
DLRPGELDDD VSNLQAEVEN LSLQERSLDE RISEMRERLR ELTEDENNQK WLYVTEDDIK  420
GVPCFQNETL IAIKAPHGTT LEVPDPDEAG EYPHRRYRIV LRSTMGPIDV YLVSQFEEKF  480
EEMSGVETPP RIPPTSHSAF VENSTVEVVT EESRGKEMAP NVQDNQRMSS DPNASQDFVG  540
GMMKIVPSDV DPVNE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1cf7_A	9e-25	288	359	1	74	PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269\|PubMed:11669580, ECO:0000269\|PubMed:11786543, ECO:0000269\|PubMed:11862494, ECO:0000269\|PubMed:11891240, ECO:0000269\|PubMed:12913157, ECO:0000269\|PubMed:16055635, ECO:0000269\|PubMed:16514015}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269\|PubMed:16055635, ECO:0000269\|PubMed:16514015, ECO:0000269\|PubMed:18424613}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ413157	0.0	HQ413157.1 Cocos nucifera E2F protein (E2F2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017700050.1	0.0	transcription factor E2FB-like
Swissprot	Q9FV71	1e-123	E2FB_ARATH; Transcription factor E2FB
TrEMBL	A0A2H3ZUF9	0.0	A0A2H3ZUF9_PHODC; transcription factor E2FB-like
STRING	XP_008799682.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP625	37	148

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.3	1e-121	E2F transcription factor 1

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wu M,Liu L,Hijazi H,Chan C A multi-layer inference approach to reconstruct condition-specific genes and their regulation. Bioinformatics, 2013. 29(12): p. 1541-52 [PMID:23610368] Kobayashi K, et al. Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J., 2015. 34(15): p. 1992-2007 [PMID:26069325]