PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s674671g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 261aa    MW: 30432.9 Da    PI: 4.4758
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s674671g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.5e-193891356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       k++++t++q++ Le+ Fe ++++  e++++LA+ lgL+ rqV +WFqNrRa++k
  PDK_30s674671g001 38 KKRRLTADQVQFLESSFELENKLEPERKAQLARDLGLQPRQVAIWFQNRRARWK 91
                       56789************************************************9 PP
2HD-ZIP_I/II132.41.7e-4237127191
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        ekkrrl+++qv++LE+sFe e+kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdyeaLk++yd lk++ ++L +e+e+L++e+
  PDK_30s674671g001  37 EKKRRLTADQVQFLESSFELENKLEPERKAQLARDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALKSSYDVLKADYDNLLDEKEKLQAEV 127
                        69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.17E-193295IPR009057Homeodomain-like
PROSITE profilePS5007117.413393IPR001356Homeobox domain
SMARTSM003897.5E-193697IPR001356Homeobox domain
PfamPF000465.3E-173891IPR001356Homeobox domain
CDDcd000861.75E-163894No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2039100IPR009057Homeodomain-like
PRINTSPR000313.0E-66473IPR000047Helix-turn-helix motif
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PRINTSPR000313.0E-67389IPR000047Helix-turn-helix motif
PfamPF021831.3E-1793134IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MNFEDVHGQR PEWSFCRPFE LEETGDEDLD EGVYRPEKKR RLTADQVQFL ESSFELENKL  60
EPERKAQLAR DLGLQPRQVA IWFQNRRARW KTKQLEKDYE ALKSSYDVLK ADYDNLLDEK  120
EKLQAEVLSL TNKVFLKEKD IGSSAPFECN KLPPHELQNI VPDAMREVKR VDARVTVCKQ  180
EDLSSANSTV LDSGSPPYID EVDRSTLMEP VDSFHAFEPD RSDLSHAGEV DEVKGSGFLR  240
LEDNLNNYRF PVEDQPYWFW P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18593RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026661502.10.0homeobox-leucine zipper protein HAT5-like
TrEMBLA0A3Q0I7X60.0A0A3Q0I7X6_PHODC; homeobox-leucine zipper protein HAT5-like
STRINGXP_008793499.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16055714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-45homeobox 1