PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s674801g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 247aa MW: 27211 Da PI: 8.8077

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s674801g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.5	2.3e-31	30	83	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ekAtPkti+++m+vkgLtl h+kSHLQkYRl PDK_30s674801g004 30 KPRLRWT-DLHERFVDAVTQLGGPEKATPKTIMRTMGVKGLTLFHLKSHLQKYRL 83 79**9.8*******************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-29	27	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.22E-13	30	85	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-22	30	84	IPR006447	Myb domain, plants
Pfam	PF14379	2.1E-22	124	169	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MFSGVLHRPE ASISQEEAHG PRLVLTADPK PRLRWTDLHE RFVDAVTQLG GPEKATPKTI 60 MRTMGVKGLT LFHLKSHLQK YRLGKQSGKE MTDQSKDASY PLENPSSSGL SPRLPTPDVN 120 EGQEVKEALR AQMEVQRRLH EQVEVQKHVQ IRMEAYHKYI DSLLEKACKI ASEQIASSGF 180 NGTGHDLPDL ATGVMCSPSD PLSPSVFHQL SLGAISLHSP GGKTSPSSAI EGQSFYPKAP 240 ELKRKLC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-18	30	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-18	30	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-18	30	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-18	30	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008794716.1	0.0	protein PHR1-LIKE 2-like
Swissprot	Q94A57	1e-71	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2H3Y853	1e-180	A0A2H3Y853_PHODC; protein PHR1-LIKE 2-like
STRING	XP_008794716.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	6e-74	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]