PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s677031g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Nin-like

Protein Properties

Length: 356aa MW: 38970.3 Da PI: 9.219

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s677031g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	71.9	8.6e-23	263	313	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l dl yF+lpik A++eL +c T LK iCR+yG++RWP+Rki+s+ PDK_30s677031g002 263 TTNMKLRDLMDYFHLPIKRASQELRLCSTSLKSICRKYGLSRWPSRKIRSI 313 6799*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.927	253	333	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-20	265	313	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MDGFDHYDPD GDVRRFLDFS VPSPLLLPPP PPAPIKTGLG TTAEIPAPDF WNFDIIGSLI 60 REMGTLGIQD GRPGTSSRPN LAAAQPTFVS IQPGQLDWMQ RVKFAVHGAL GTFKHAIFHL 120 ESFREGNQPV KELLYIDLSD QNFDWVKNLL TQYVMLLKAN GCIVVQDSVS SFFDALCGGI 180 GFGVGSTSAP GMVVGSTSAP GASSLPPELE LGASSPNSGR QSRSGFSSES STKETDGDPN 240 TNGVTSRVTR PRKTGIAAQR ERTTNMKLRD LMDYFHLPIK RASQELRLCS TSLKSICRKY 300 GLSRWPSRKI RSIDRQIESL ERELQSRRGG AGSLAIREEI EKLKEKRARL CTGLST

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MDGFDHYDPD GDVRRFLDFS VPSPLLLPPP PPAPIKTGLG TTAEIPAPDF WNFDIIGSLI  60
REMGTLGIQD GRPGTSSRPN LAAAQPTFVS IQPGQLDWMQ RVKFAVHGAL GTFKHAIFHL  120
ESFREGNQPV KELLYIDLSD QNFDWVKNLL TQYVMLLKAN GCIVVQDSVS SFFDALCGGI  180
GFGVGSTSAP GMVVGSTSAP GASSLPPELE LGASSPNSGR QSRSGFSSES STKETDGDPN  240
TNGVTSRVTR PRKTGIAAQR ERTTNMKLRD LMDYFHLPIK RASQELRLCS TSLKSICRKY  300
GLSRWPSRKI RSIDRQIESL ERELQSRRGG AGSLAIREEI EKLKEKRARL CTGLST

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	5e-13	NIN like protein 7