PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s679431g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 643aa MW: 73640.5 Da PI: 7.283

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s679431g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.8	3.7e-18	73	166	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 ++Y ++A++ GF vr+++sk + ++ ++kr++vC + g + + k+ + k++r+++ +r++C+a++++kk+ +w+v ++++ HnHe PDK_30s679431g003 73 EYYTSFARSNGFLVRRERSKGNpEHPLGVYKRELVCHRAGPPLPIKSGEAKRQRKKKPSRCKCDAQMVIKKNIsagVTRWVVVNFNNVHNHE 164 69***************999766677*************999999999*************98767789*********** PP FAR1 89 la 90 l PDK_30s679431g003 165 LL 166 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-15	73	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-20	288	381	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MKAHWTHKQR CPCGDDQCYL DADSYEEDEL VEPMGLTEPN LSLGTPQTSL GASKIVAPPY 60 VGQSFQSDDE ALEYYTSFAR SNGFLVRRER SKGNPEHPLG VYKRELVCHR AGPPLPIKSG 120 EAKRQRKKKP SRCKCDAQMV IKKNISAGVT RWVVVNFNNV HNHELLDSND AQYFPGYRYI 180 SAVDRERILA LAKGGCNVNL IMRALEMEKG VRPGELTFTE KDLKNFLQAS MSINPESEGS 240 ELLKACKAMK EKNPDFRYEF TLYENNKLEH LIWSYAGSVR AYKLFGDVLF FDTAYHLHSY 300 DRPAGVWFGV DNHGHTIFFC CVVLLDEKPD SYKWALQAFL RLMDKKFPQT ILTDFHMGLK 360 DAVSVELPST KHAFSIWHLM SKLPSWFSAS LGPQYEKFKS EFYRIHDLDT EEEFEHQWNQ 420 MVIDFGLGSD NKHIALLFSH RSYWAVPYLR NWFFGGLLTT GHSMSIRSFF RGFLNSQTRL 480 KDIVEQVGVA VDFQNQAGEE ATTQQSQQNI KIRTCLPIEE HASTILTHYA FEMFQKEIML 540 STQFAVFETS RENYLVRHHL KSDGGHVESS ITKDRFDYVQ WHLSRLLNHV RDMPATDEAA 600 SDLEPSSSFD ATVDVVPARS VTRGRPRKIR GIVKAAKETQ ASS

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MKAHWTHKQR CPCGDDQCYL DADSYEEDEL VEPMGLTEPN LSLGTPQTSL GASKIVAPPY  60
VGQSFQSDDE ALEYYTSFAR SNGFLVRRER SKGNPEHPLG VYKRELVCHR AGPPLPIKSG  120
EAKRQRKKKP SRCKCDAQMV IKKNISAGVT RWVVVNFNNV HNHELLDSND AQYFPGYRYI  180
SAVDRERILA LAKGGCNVNL IMRALEMEKG VRPGELTFTE KDLKNFLQAS MSINPESEGS  240
ELLKACKAMK EKNPDFRYEF TLYENNKLEH LIWSYAGSVR AYKLFGDVLF FDTAYHLHSY  300
DRPAGVWFGV DNHGHTIFFC CVVLLDEKPD SYKWALQAFL RLMDKKFPQT ILTDFHMGLK  360
DAVSVELPST KHAFSIWHLM SKLPSWFSAS LGPQYEKFKS EFYRIHDLDT EEEFEHQWNQ  420
MVIDFGLGSD NKHIALLFSH RSYWAVPYLR NWFFGGLLTT GHSMSIRSFF RGFLNSQTRL  480
KDIVEQVGVA VDFQNQAGEE ATTQQSQQNI KIRTCLPIEE HASTILTHYA FEMFQKEIML  540
STQFAVFETS RENYLVRHHL KSDGGHVESS ITKDRFDYVQ WHLSRLLNHV RDMPATDEAA  600
SDLEPSSSFD ATVDVVPARS VTRGRPRKIR GIVKAAKETQ ASS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008807587.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
TrEMBL	A0A2H3Z2X8	0.0	A0A2H3Z2X8_PHODC; protein FAR1-RELATED SEQUENCE 11-like
STRING	XP_008807587.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-170	FAR1-related sequence 11