PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s679651g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 186aa    MW: 21201.9 Da    PI: 4.651
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s679651g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.6e-179105295
                        EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        +k+l++sd++++gr+vlpk+ ae++   +  + ++++ + d e+ ++W++k++y  ++ks++y+l  ++ +Fv+ +gL+ gD ++++ d+ +
  PDK_30s679651g002   9 QKELSHSDASSLGRIVLPKREAEAYlpVLTARDGVEINMDDwETFQVWTFKYRYwpNNKSRMYILD-NTGDFVSTHGLQIGDLIMIYKDD-Q 98 
                        799************************77788999******8888*********777777777776.*******************9443.5 PP

                        EE..EEE CS
                 B3  89 efelvvk 95 
                        + +lv++
  PDK_30s679651g002  99 KDRLVIR 105
                        5556654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-256112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-197105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.1928110IPR003340B3 DNA binding domain
SMARTSM010193.6E-138110IPR003340B3 DNA binding domain
PfamPF023624.3E-149106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDGLRFLLQK ELSHSDASSL GRIVLPKREA EAYLPVLTAR DGVEINMDDW ETFQVWTFKY  60
RYWPNNKSRM YILDNTGDFV STHGLQIGDL IMIYKDDQKD RLVIRAKKAV KEHPAAFADD  120
GIFDSIAPDI VVASARYSDL FYPLPDGMSI SHGMNNTYGD DLIYAFAADF TMGFSEERMQ  180
NHSVAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A9e-4741121109B3 domain-containing transcription factor FUS3
6j9b_D9e-4741121109B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939475.11e-115B3 domain-containing protein LFL1
SwissprotA4LBC01e-52LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLA0A2H3Z8J81e-100A0A2H3Z8J8_PHODC; B3 domain-containing protein LFL1-like
STRINGXP_008775431.11e-136(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.13e-47B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  4. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]