PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s680531g012
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 302aa    MW: 33013.2 Da    PI: 9.5499
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s680531g012genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.63.9e-3197155259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  PDK_30s680531g012  97 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 155
                        699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.10991157IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-3192157IPR003657WRKY domain
SuperFamilySSF1182901.57E-2694157IPR003657WRKY domain
SMARTSM007741.4E-3796156IPR003657WRKY domain
PfamPF031065.2E-2698155IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MRSPCNIFSR VLQISPSTSK NSPLSPRAIK PSPIVTGDMV KMAGGSVGCP LDPTAGVQIS  60
SPRTTGIKRR KSQAKKVVCI PAPAAASNRP SGEVVPSDLW AWRKYGQKPI KGSPYPRGYY  120
RCSSSKGCSA RKQVERSRTD PNMLVITYTS EHNHPWPTQR NALAGSTRAQ PTKSGSSASK  180
NPAHNQKPTA SLKEESREAT SSSAPAIKEE AREMEKAMDP VEDNEFDQVF QQSYKPMIPD  240
SDQPDDFFAD LAELEPDPMS LIFSKGFMET KPADEERGVR ASDPFTMFDW AGNSFGEARK  300
GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-2771158280Disease resistance protein RRS1
5w3x_D8e-2771158280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788702.10.0probable WRKY transcription factor 14
SwissprotQ9SA804e-79WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A2H3XTU50.0A0A2H3XTU5_PHODC; probable WRKY transcription factor 14
STRINGXP_008788702.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.12e-81WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]