PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s682511g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ZF-HD
Protein Properties Length: 253aa    MW: 28301.2 Da    PI: 8.4254
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s682511g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.93.7e-3156112360
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                         vrY+eClkNhAas+Gg+a+DGCgEfm+s geegt +al+C+AC CHRnFHR+e e e
  PDK_30s682511g006  56 VVRYRECLKNHAASIGGNATDGCGEFMAS-GEEGTLEALRCSACSCHRNFHRKEIEGE 112
                        69**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2257112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.2E-2957109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.6E-3058109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.97959108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.3E-29177248IPR009057Homeodomain-like
SuperFamilySSF466891.47E-18181247IPR009057Homeodomain-like
TIGRFAMsTIGR015653.2E-27186242IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDLSGHEGEI LSPITSKFSG AHSHSRPSDS PPPGPPLPPF STTPTEEQQP TKGGAVVRYR  60
ECLKNHAASI GGNATDGCGE FMASGEEGTL EALRCSACSC HRNFHRKEIE GECHHHHLKD  120
RKFVDHKGVL ISGAEAFGCY YNNPASHSLI PSPLPHQMVM PLGALQAPET DQMEAVGRER  180
APHMVRKRFR TKFTPEQKEK MLNFADRIGW RLQRQEESMV QQFCQEIGVK RRVLKVWMHN  240
NKHSLAKKEL PPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A3e-251852441675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789175.10.0zinc-finger homeodomain protein 4-like
SwissprotO647228e-71ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A2H3XV220.0A0A2H3XV22_PHODC; zinc-finger homeodomain protein 4-like
STRINGXP_008789175.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-72homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]