PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s682911g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 1091aa MW: 119347 Da PI: 6.8698

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s682911g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.9e-05	938	960	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F+ + +L++H+ H PDK_30s682911g002 938 HQCNICGLRFRLQAQLNSHLDWH 960 79*****************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51391	21.946	1	99	IPR006569	CID domain
SMART	SM00582	7.6E-11	9	96	IPR006569	CID domain
Gene3D	G3DSA:1.25.40.90	4.1E-24	20	94	IPR008942	ENTH/VHS
CDD	cd03562	4.83E-22	21	84	No hit	No description
SuperFamily	SSF48464	5.62E-20	21	93	IPR008942	ENTH/VHS
Pfam	PF04818	3.3E-9	27	80	IPR006903	RNA polymerase II-binding domain
PROSITE profile	PS50927	8.604	139	263	IPR001480	Bulb-type lectin domain
Gene3D	G3DSA:2.90.10.10	7.6E-8	140	222	IPR001480	Bulb-type lectin domain
SMART	SM00108	0.0055	145	270	IPR001480	Bulb-type lectin domain
SuperFamily	SSF51110	1.96E-6	175	221	IPR001480	Bulb-type lectin domain
PROSITE profile	PS50157	9.141	938	965	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	940	960	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1091 aa Download sequence Send to blast
MHCSCAPYQS GKNLSTLSRE KVPSEQRLPS LYLLDSIVKN IGRDYIKYFA ARLPEVFCRA 60 YKQVDSSVHP SMRHLFGTWK GVFPSAPLQI IEKELGFSPI VNGSSGAAKS RPDSPTQRPP 120 QSIHVNPKYL EARQRLQHST RGTTLTPLGS TNSWPSPSSD FAFGFRALDP NASLFLLAIW 180 YNSTSPQAIV WFANGHNPVQ AGSKLELTSD GQLSLTDESG NEAKEIINDD INRAVSSIDD 240 AERSDKAAII GSTRQWTNPP SKMPNLRPHR VLINNPIHEK KEFRGHEFSS DVPVQSDLGV 300 ERVSKRLKER DGLDKPYHGA GINASEMHVS SGVFDVNHAY RVYRSSGSAH LDNQLPSVQD 360 RSIQRTSNNW KNSEEEEYMW DDMNSRAIDN ASNNSLIKGG WSTNDENKSA NLQKGKLMPL 420 ESKHLSSHLN KIDSLSLLMK TAGREGRVPL LEELEEHLQQ PHAKHDTDCG IGMETSADSL 480 YMGRDPLEHP TSSIWAPLDM PHSMIGLNHT SSRISSQSEG QPISFRGGLS TSMSSSLVPG 540 STGMSGQLRQ QQSQPPSPSA HSPPSSALLQ HQKSHNSIDS DLLPSNSFFP IGQKPMHLPE 600 RLSQAPDTPV TQDSFPISAQ SHPHHSHSPL TSKTPPSYPS QHLQNSSASG SSAPFAQLRH 660 HLRFLQQPEP NLSVQETQIQ SQTSHQIKKS PPLSLSFGSH QIGLPGKNNS DNAAVEISDQ 720 PSTSNLLAAI MKSGLLPNHT MNNFQNLNMQ PPLPSGSPPI QVVTSSDPSV TPASISPLLS 780 HDNALMLPSM RAVLPPLPPG PLPPSLVHTD RETSNLAIST TNPLSRLLSS LVAKGLISSP 840 ATDLPAATSV QLPNKLGNQS SAFASSTSEQ KLSNLDISTI RSLAAKEPSG TEDIAPTSAA 900 LLPSTVTLKD LLGIEFKPEI IRKFHPEVIS SLFDDLEHQC NICGLRFRLQ AQLNSHLDWH 960 GLKKCELSSF NRVSRKWYVS LTSWVTGYVG PQCGPLESAT SVEKIVLMDK QYEPAVPADE 1020 SQCICALCGE PFEDIYSAER VEWMYKGAVY LNLTNRQGDM DFMHESAGHV PIVHAKCMSK 1080 SSADDMEAAL D

Sequence ? help Back to Top

Protein Sequence Length: 1091 aa Download sequence Send to blast

MHCSCAPYQS GKNLSTLSRE KVPSEQRLPS LYLLDSIVKN IGRDYIKYFA ARLPEVFCRA  60
YKQVDSSVHP SMRHLFGTWK GVFPSAPLQI IEKELGFSPI VNGSSGAAKS RPDSPTQRPP  120
QSIHVNPKYL EARQRLQHST RGTTLTPLGS TNSWPSPSSD FAFGFRALDP NASLFLLAIW  180
YNSTSPQAIV WFANGHNPVQ AGSKLELTSD GQLSLTDESG NEAKEIINDD INRAVSSIDD  240
AERSDKAAII GSTRQWTNPP SKMPNLRPHR VLINNPIHEK KEFRGHEFSS DVPVQSDLGV  300
ERVSKRLKER DGLDKPYHGA GINASEMHVS SGVFDVNHAY RVYRSSGSAH LDNQLPSVQD  360
RSIQRTSNNW KNSEEEEYMW DDMNSRAIDN ASNNSLIKGG WSTNDENKSA NLQKGKLMPL  420
ESKHLSSHLN KIDSLSLLMK TAGREGRVPL LEELEEHLQQ PHAKHDTDCG IGMETSADSL  480
YMGRDPLEHP TSSIWAPLDM PHSMIGLNHT SSRISSQSEG QPISFRGGLS TSMSSSLVPG  540
STGMSGQLRQ QQSQPPSPSA HSPPSSALLQ HQKSHNSIDS DLLPSNSFFP IGQKPMHLPE  600
RLSQAPDTPV TQDSFPISAQ SHPHHSHSPL TSKTPPSYPS QHLQNSSASG SSAPFAQLRH  660
HLRFLQQPEP NLSVQETQIQ SQTSHQIKKS PPLSLSFGSH QIGLPGKNNS DNAAVEISDQ  720
PSTSNLLAAI MKSGLLPNHT MNNFQNLNMQ PPLPSGSPPI QVVTSSDPSV TPASISPLLS  780
HDNALMLPSM RAVLPPLPPG PLPPSLVHTD RETSNLAIST TNPLSRLLSS LVAKGLISSP  840
ATDLPAATSV QLPNKLGNQS SAFASSTSEQ KLSNLDISTI RSLAAKEPSG TEDIAPTSAA  900
LLPSTVTLKD LLGIEFKPEI IRKFHPEVIS SLFDDLEHQC NICGLRFRLQ AQLNSHLDWH  960
GLKKCELSSF NRVSRKWYVS LTSWVTGYVG PQCGPLESAT SVEKIVLMDK QYEPAVPADE  1020
SQCICALCGE PFEDIYSAER VEWMYKGAVY LNLTNRQGDM DFMHESAGHV PIVHAKCMSK  1080
SSADDMEAAL D

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008813677.1	0.0	polyadenylation and cleavage factor homolog 4-like isoform X1
TrEMBL	A0A2H3ZH06	0.0	A0A2H3ZH06_PHODC; polyadenylation and cleavage factor homolog 4-like isoform X1
STRING	XP_008813677.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7261	7	8