PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s683631g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family LBD
Protein Properties Length: 242aa    MW: 26362.7 Da    PI: 6.8271
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s683631g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.61e-3871071100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC+++C++apyf++eq +++fa++hk+FGasnv+kll +lp  +r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+
  PDK_30s683631g006   7 PCGACKFLRRKCVRGCIFAPYFCHEQgAAHFAAIHKVFGASNVSKLLMHLPVADRCEAAVTISYEAQARLQDPIYGCVAHIFTLQQQVVNLQ 98 
                        7*************************89**************************************************************** PP

             DUF260  92 aelallkee 100
                        a+la+lk++
  PDK_30s683631g006  99 AQLASLKAQ 107
                        ****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.0076108IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MTGFGSPCGA CKFLRRKCVR GCIFAPYFCH EQGAAHFAAI HKVFGASNVS KLLMHLPVAD  60
RCEAAVTISY EAQARLQDPI YGCVAHIFTL QQQVVNLQAQ LASLKAQAAA QGCATASTST  120
STSTSREEKL NNKFPPYNQQ DGQGFFQGGD LRTSQALVSD PMMTPEAMLS YGNELLINPN  180
FFQSSQECHP HSYATGDPIS FSAGDNYSCA MASPDMQANT RRPAYHDMED LQSVTFAYLH  240
HA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3431017104LOB family transfactor Ramosa2.1
5ly0_B4e-3431017104LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787549.10.0LOB domain-containing protein CRL1-like
SwissprotQ5UG132e-69LBD_ORYSJ; LOB domain-containing protein CRL1
TrEMBLA0A2H3XRK80.0A0A2H3XRK8_PHODC; LOB domain-containing protein CRL1-like
STRINGXP_008787549.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-53lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Coudert Y,Périn C,Courtois B,Khong NG,Gantet P
    Genetic control of root development in rice, the model cereal.
    Trends Plant Sci., 2010. 15(4): p. 219-26
    [PMID:20153971]
  2. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  3. Coudert Y, et al.
    Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.
    BMC Genomics, 2011. 12: p. 387
    [PMID:21806801]