PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s684781g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 254aa    MW: 28627.6 Da    PI: 9.6791
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s684781g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.3e-323792258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
                       dDgynWrKYGqK+vkg e+prsYY+Ct ++Cpvkkkvers  +++v+ei+Y+g+Hnh
  PDK_30s684781g004 37 DDGYNWRKYGQKQVKGGEYPRSYYKCTRPNCPVKKKVERSL-EGQVTEIIYKGQHNH 92
                       8****************************************.*************** PP
2WRKY1053.9e-33169227159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYYrCt agC+v+k++er++++pk+v++tYeg+Hnh+
  PDK_30s684781g004 169 LDDGYRWRKYGQKVVKGNPHPRSYYRCTNAGCSVRKHIERASTEPKAVITTYEGKHNHH 227
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-283295IPR003657WRKY domain
SuperFamilySSF1182902.22E-253495IPR003657WRKY domain
SMARTSM007744.7E-343694IPR003657WRKY domain
PfamPF031063.9E-253792IPR003657WRKY domain
PROSITE profilePS5081122.7793795IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-36154229IPR003657WRKY domain
SuperFamilySSF1182904.18E-29161229IPR003657WRKY domain
PROSITE profilePS5081137.436164229IPR003657WRKY domain
SMARTSM007741.5E-37169228IPR003657WRKY domain
PfamPF031064.1E-26170227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MPPLSLDANN TMNKSADGSH ADHKPQPAAL TVDKPADDGY NWRKYGQKQV KGGEYPRSYY  60
KCTRPNCPVK KKVERSLEGQ VTEIIYKGQH NHLRPSQNRR SRCNELNGST ANFSRSTETM  120
SKRDRDSSHW TPEQLSDSDE GSDTEQDPKR RTVTEPRIIV QTTSEVDLLD DGYRWRKYGQ  180
KVVKGNPHPR SYYRCTNAGC SVRKHIERAS TEPKAVITTY EGKHNHHVPA ARNSSHATTN  240
AGAATSTTSP PFME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-4037230878Probable WRKY transcription factor 4
2lex_A2e-4037230878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008780961.21e-174probable WRKY transcription factor 3
SwissprotQ9ZQ709e-94WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2H3XAN61e-173A0A2H3XAN6_PHODC; probable WRKY transcription factor 3
STRINGXP_008780961.11e-174(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-93WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]