PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s687251g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 183aa    MW: 20737 Da    PI: 5.6898
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s687251g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.2e-0936602348
                       -HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                       +W++Ia +++ gRt++++k++w+++l
  PDK_30s687251g001 36 RWSLIAGRLP-GRTANDVKNYWNSHL 60
                       5*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-112960IPR009057Homeodomain-like
SuperFamilySSF466891.25E-73364IPR009057Homeodomain-like
PROSITE profilePS500906.4233660IPR017877Myb-like domain
CDDcd001673.70E-63660No hitNo description
PfamPF002495.1E-73660IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
LYHDAATNCM DSRNQGYQGV LSLEKISSAN ETISFRWSLI AGRLPGRTAN DVKNYWNSHL  60
SKKPDVRDHG ERSKRGNIVF KPRPQTIPTT WIWSRDQPSS ASEIRQEKTQ VPEIPSSENH  120
RTRVDTQIIG VPNVENVITK EMQTDNRVIQ DLEDNKDDES LAGVGGWDDL LRDINLWGDL  180
GAI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026657506.11e-104transcription factor MYB114-like
TrEMBLA0A3Q0HSF81e-103A0A3Q0HSF8_PHODC; transcription factor MYB114-like
STRINGXP_008779039.11e-104(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2550025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-15myb domain protein 113