PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s687431g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 382aa    MW: 42666.8 Da    PI: 9.9866
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s687431g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.8e-19998299
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                 B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                       fkv      l+s+ l +p  f e ++  +e + t++l+ +sg +W+v++   k+s++ ++++GWk+Fv ++ ++ gDf+vF++dg   f   v 
  PDK_30s687431g001  9 FKVY--FPQLSSDHLKIPPAFREYIE--HELPGTVSLKGPSGGTWNVEF--VKTSKGLLFANGWKKFVADHSIELGDFLVFRYDGGLHF--SVL 94
                       5555..34567778*******75445..457889***************..********************************985555..888 PP

                       EE-S CS
                 B3 96 vfrk 99
                       vf++
  PDK_30s687431g001 95 VFDA 98
                       8876 PP
2B351.22.3e-162923661898
                        --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +p +f++eh   ++ sk++tl d++g+ W v++    +s+r  +++GW +F  an+L+  D++vF+l++r+    +v++fr
  PDK_30s687431g001 292 IPYPFVREHL--PKISKKMTLWDPNGKPWAVNY--VSYSSRGGFSAGWGGFSYANNLEKYDVCVFELIKRDHM--KVHIFR 366
                        9********5..347899***************..6666666699**********************986555..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-234101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-255101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.353699IPR003340B3 DNA binding domain
CDDcd100176.93E-21697No hitNo description
PfamPF023625.9E-16898IPR003340B3 DNA binding domain
SMARTSM010193.5E-15899IPR003340B3 DNA binding domain
SMARTSM010193.7E-11277368IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-22290366IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-21291366IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.111292368IPR003340B3 DNA binding domain
PfamPF023624.8E-14292366IPR003340B3 DNA binding domain
CDDcd100174.59E-20292366No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MARASPHFFK VYFPQLSSDH LKIPPAFREY IEHELPGTVS LKGPSGGTWN VEFVKTSKGL  60
LFANGWKKFV ADHSIELGDF LVFRYDGGLH FSVLVFDATA CEKEAAFLAR SYGGAHITIV  120
DGIEGGEEGE DTMGEHDSKA LVLSPSESFG VSRKRTLWNI DCLAIQGPPS KKVNKKKDSP  180
SHEIAAISQA DLDSWNLRKS KSKAPDRISP SSGALAAPHE KVHANTTREK ALHEMKTVSS  240
EYTIAVKKAK AKLQRGRFVQ RTLLISNLWT FNSGKELLTS CQSSWRNPPP NIPYPFVREH  300
LPKISKKMTL WDPNGKPWAV NYVSYSSRGG FSAGWGGFSY ANNLEKYDVC VFELIKRDHM  360
KVHIFRVVKE IAPLIRNTKC KS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026659896.10.0B3 domain-containing protein Os11g0197600-like isoform X4
TrEMBLA0A3Q0HZ760.0A0A3Q0HZ76_PHODC; B3 domain-containing protein Os11g0197600-like isoform X4
STRINGXP_008787667.11e-170(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-21B3 family protein