PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s687521g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 590aa MW: 62986.6 Da PI: 9.0684

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s687521g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H PDK_30s687521g002 79 FICEVCNKGFQREQNLQLHRRGH 101 89*******************88 PP
2	zf-C2H2	12.5	0.00045	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ PDK_30s687521g002 155 WKCDKCSKRYAVQSDWKAHSKTC 177 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.6E-6	78	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.62E-7	78	101	No hit	No description
PROSITE profile	PS50157	10.99	79	101	IPR007087	Zinc finger, C2H2
Pfam	PF12171	2.9E-5	79	101	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0052	79	101	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.0E-4	143	176	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.62E-7	150	175	No hit	No description
SMART	SM00355	140	155	175	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MAAASSSAPF FGIREEEHHN KQQHLQQQQS SSTPGSSAPA ASQPPPPPQK KKRNLPGNPN 60 PDAEVIALSP KTLLATNRFI CEVCNKGFQR EQNLQLHRRG HNLPWKLRQK NPKEQRRRVY 120 LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHSKTCGTR 180 EYRCDCGTLF SRRDSFITHR AFCDALAQES ARIPTGLSTI GSHLYGNSSM SLGLSQVNSQ 240 MSSLQDQNHP SADLLRLGGR SGGGTQFDHL NRSSFRQPQP PHSSPFFLGG GSSQGFNDDP 300 QSTHPLLQSK PFHGLMQLPD LQANSNNASS SSSAAATAAN LFNLSFFSNG GSTSTMNNSN 360 STGNQNTNLL ISDHFNNGNG SSEPTTLFSG NLMSDHMASG ISSLYNTSMH NESSVPQMSA 420 TALLQKAAQM GATNSGGSGG SLLRGFGSSF FNGSKAAGFH VTFSGGGGGG GGESSRSQVE 480 NENHFQDLMN SLANGSTGIF SGGHEQQTGF GGFDPGLCNM DDGKLHPNLL PSGIGGSDRL 540 TRDFLGVNSM VRSMGGGISP REQHLGIDVG SLDSEMKSGS SARSFGGGNL

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MAAASSSAPF FGIREEEHHN KQQHLQQQQS SSTPGSSAPA ASQPPPPPQK KKRNLPGNPN  60
PDAEVIALSP KTLLATNRFI CEVCNKGFQR EQNLQLHRRG HNLPWKLRQK NPKEQRRRVY  120
LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHSKTCGTR  180
EYRCDCGTLF SRRDSFITHR AFCDALAQES ARIPTGLSTI GSHLYGNSSM SLGLSQVNSQ  240
MSSLQDQNHP SADLLRLGGR SGGGTQFDHL NRSSFRQPQP PHSSPFFLGG GSSQGFNDDP  300
QSTHPLLQSK PFHGLMQLPD LQANSNNASS SSSAAATAAN LFNLSFFSNG GSTSTMNNSN  360
STGNQNTNLL ISDHFNNGNG SSEPTTLFSG NLMSDHMASG ISSLYNTSMH NESSVPQMSA  420
TALLQKAAQM GATNSGGSGG SLLRGFGSSF FNGSKAAGFH VTFSGGGGGG GGESSRSQVE  480
NENHFQDLMN SLANGSTGIF SGGHEQQTGF GGFDPGLCNM DDGKLHPNLL PSGIGGSDRL  540
TRDFLGVNSM VRSMGGGISP REQHLGIDVG SLDSEMKSGS SARSFGGGNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-34	151	215	3	67	Zinc finger protein JACKDAW
5b3h_F	4e-34	151	215	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	263	GGRSGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120723	1e-127	AK120723.1 Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008812809.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_008812816.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_008812824.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_008812830.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_026656208.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q9ZUL3	1e-136	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A2H3ZFR2	0.0	A0A2H3ZFR2_PHODC; protein indeterminate-domain 5, chloroplastic-like
STRING	XP_008812809.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1733	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-112	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]