PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s689731g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 51aa    MW: 5711.32 Da    PI: 9.189
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s689731g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-071547332
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmg 32
                       +WT  E +++ +a +++ ++   +W+++a+ +g
  PDK_30s689731g004 15 SWTLRENKRFEEALAKYDKDtpdRWHKVAQAVG 47
                       7*****************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.08E-8948IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 51 aa     Download sequence    Send to blast
MASSSLSLPR TSDSSWTLRE NKRFEEALAK YDKDTPDRWH KVAQAVGSGS I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026666196.14e-29protein RADIALIS-like 4
TrEMBLA0A3Q0IGV59e-28A0A3Q0IGV5_PHODC; protein RADIALIS-like 4
STRINGXP_008810724.12e-28(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-14RAD-like 6