PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s690931g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

EIL

Protein Properties

Length: 220aa MW: 25317.7 Da PI: 6.52

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s690931g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	72.5	1.1e-22	1	50	49	98
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 49 msraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkek 98 msra D +L YMl m + a+GfvYgiipekgkpv+gasd+Lr+WWkek PDK_30s690931g001 1 MSRAHDKVLEYMLILMDLGGARGFVYGIIPEKGKPVSGASDNLRGWWKEK 50 89***********************************************8 PP
2	EIN3	164.9	9e-51	50	188	153	290
SSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHH CS EIN3 153 qhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesf 244 + c+ppqrrfpl++ v+pPWWPt +e+ww++lgls+dqg+ py+kphdlkkawkvsvL avik +sp++++i++ + +s++lqdkmsake+ PDK_30s690931g001 50 KQCEPPQRRFPLDRRVSPPWWPTMEEDWWPQLGLSRDQGPVPYRKPHDLKKAWKVSVLIAVIKNISPDFDHIQRTVQNSRCLQDKMSAKERT 141 68**************************************************************************************** PP HHHHHHTTTTT-S--XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 245 allsvlnqeekecatvsahss.slrkqspkvtlsceqkedvegkkes 290 ++svl+qe k + +++++ + + +++ ++ s+++k+dv+ +++ PDK_30s690931g001 142 LWSSVLHQEIKSYMELHPDAPqLTLHKEAATSSSSSTKYDVDIEDDA 188 ***************662444577788888999***77655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	2.5E-22	1	50	No hit	No description
SuperFamily	SSF116768	1.31E-42	50	154	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
Gene3D	G3DSA:1.10.3180.10	1.4E-49	50	160	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
Pfam	PF04873	2.0E-42	51	150	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MSRAHDKVLE YMLILMDLGG ARGFVYGIIP EKGKPVSGAS DNLRGWWKEK QCEPPQRRFP 60 LDRRVSPPWW PTMEEDWWPQ LGLSRDQGPV PYRKPHDLKK AWKVSVLIAV IKNISPDFDH 120 IQRTVQNSRC LQDKMSAKER TLWSSVLHQE IKSYMELHPD APQLTLHKEA ATSSSSSTKY 180 DVDIEDDAFY AGVEDDRLVD PDDDRKEGLI ALPPNNNKLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	2e-46	50	161	23	134	Protein ETHYLENE INSENSITIVE 3
4zds_B	2e-46	50	161	23	134	Protein ETHYLENE INSENSITIVE 3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator in the ethylene response pathway (PubMed:19798512). Involved in wound signaling by binding specifically to the DNA sequence 5'-ATGTACCT-3' found in the promoter of some wound-inducible genes (PubMed:19798512). Binds directly to the DNA sequence 5'-TGTTACAAATACC-3' in the promoter of the GA20OX2 gene to activate its expression at the transcriptional level during ethylene signaling (PubMed:30002253). {ECO:0000269\|PubMed:19798512, ECO:0000269\|PubMed:30002253}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding. {ECO:0000269\|PubMed:19798512}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931518.1	1e-138	protein ETHYLENE-INSENSITIVE 3-like 1a
Swissprot	Q8W3M0	3e-61	EIL1B_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 1b
TrEMBL	A0A3Q0IIB2	1e-133	A0A3Q0IIB2_PHODC; ETHYLENE INSENSITIVE 3-like 1 protein
STRING	XP_008807365.1	1e-140	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP638	38	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73730.1	1e-57	ETHYLENE-INSENSITIVE3-like 3

Publications ? help Back to Top
Kuroha T, et al. Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding. Science, 2018. 361(6398): p. 181-186 [PMID:30002253]