PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s692531g009

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

GRAS

Protein Properties

Length: 215aa MW: 25267 Da PI: 9.8009

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s692531g009	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	161	1e-49	38	211	201	374
GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 + V+++ + +l+de+v ++s+r++vL+++++++P+v+++ + +++++ F++rf eal +ysalfd+le+++pre+e+r +Er l+gr PDK_30s692531g009 38 EVFVKSISKKRNLVDETVIVDSPRNKVLNTIRKMNPDVFIHGVVNGSYSAPFFVTRFREALFHYSALFDMLETNVPREDEQRLLIERDLFGR 129 5789999999******************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ nv+aceg+er+er et+++W+ r +aGF+++pl+ +++k+ak ++ ++ + + ++e+s +l++gWk+r ++++SaW+ PDK_30s692531g009 130 DALNVIACEGSERVERPETYKQWQVRNLRAGFTQLPLNPEIMKKAKDKVKIHYHKDFIIDEDSRWLLQGWKGRIIYALSAWK 211 *************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	25.395	1	191	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-47	38	211	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MLASLDPDEY GPQSTARKHE TARLKEKMRR KKEEPLGEVF VKSISKKRNL VDETVIVDSP 60 RNKVLNTIRK MNPDVFIHGV VNGSYSAPFF VTRFREALFH YSALFDMLET NVPREDEQRL 120 LIERDLFGRD ALNVIACEGS ERVERPETYK QWQVRNLRAG FTQLPLNPEI MKKAKDKVKI 180 HYHKDFIIDE DSRWLLQGWK GRIIYALSAW KPYET

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008784606.1	1e-119	scarecrow-like protein 9
Refseq	XP_008784607.1	1e-119	scarecrow-like protein 9
Swissprot	O80933	5e-79	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2H3XJ75	1e-118	A0A2H3XJ75_PHODC; scarecrow-like protein 9
STRING	XP_008784606.1	1e-119	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22289	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	4e-81	GRAS family protein