PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s693171g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 200aa    MW: 22498.9 Da    PI: 9.6082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s693171g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08124164954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  PDK_30s693171g003 124 ARLRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 164
                        699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.421115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-13116174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-14119177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-13121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-6125164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.49E-6138169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDLDYLNSSP ETQRDWMNMR IQMEKVAEFL ELPPSTEFGS AVPSPEFNSS PTTPTSPMLS  60
GPQPTVPFVG TTTTQDQLPC SAAAMRDMIF RIAAMQPIHI DPESVKRPRR RNVKISKDPQ  120
SVAARLRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKTQVRS LERAAASQSM  180
GLLPDQGFMK SSYMNSNHIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797316.11e-125transcription factor HEC1
SwissprotQ9SND43e-42HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2H3YEG51e-124A0A2H3YEG5_PHODC; transcription factor HEC1
STRINGXP_008797316.11e-125(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.17e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]