PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s693301g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

M-type_MADS

Protein Properties

Length: 211aa MW: 24152.7 Da PI: 9.7458

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s693301g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73.9	1.3e-23	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+s rqvt+skRr+gilKKA+ELS+LCd+++ +++fs+tgk PDK_30s693301g004 9 KRLENTSGRQVTYSKRRAGILKKAKELSILCDIDIILLMFSPTGK 53 789*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.189	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.9E-32	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00120	4.95E-26	2	56	No hit	No description
SuperFamily	SSF55455	3.01E-26	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-20	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MGRVKLKIKR LENTSGRQVT YSKRRAGILK KAKELSILCD IDIILLMFSP TGKPTTCLGE 60 RSNIEDVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGSS GQTVEELTNH 120 SRLLQAQISE VQKRLSYWSE PEKINSIDHI RAMEESLKHS LNQVQLQKFQ NGIHLPLEIG 180 GEQQSSNISW LHDNEGQPMM LPEDTNLPRQ R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	6e-13	1	92	1	90	MEF2C
5f28_B	6e-13	1	92	1	90	MEF2C
5f28_C	6e-13	1	92	1	90	MEF2C
5f28_D	6e-13	1	92	1	90	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008802579.1	1e-147	agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q7X9I0	3e-83	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A2H3YRH8	1e-146	A0A2H3YRH8_PHODC; agamous-like MADS-box protein AGL65 isoform X1
STRING	XP_008802579.1	1e-147	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4626	36	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-74	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]