PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s694021g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 186aa    MW: 21207.6 Da    PI: 7.8587
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s694021g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-14120165247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        ++WT+eE+ l++++ + +  g+Wk+I+r +  +Rt+ q+ s+ qk+
  PDK_30s694021g003 120 KPWTEEEHRLFLQGLATHRRGDWKAISRNFVVTRTPAQVASHAQKF 165
                        58******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.6E-41264IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-101470IPR009057Homeodomain-like
CDDcd001670.005161562No hitNo description
PROSITE profilePS500905.1221662IPR017877Myb-like domain
PROSITE profilePS5129418.894114170IPR017930Myb domain
SuperFamilySSF466898.97E-16115170IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-15117169IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-10118161IPR009057Homeodomain-like
SMARTSM007174.8E-12118168IPR001005SANT/Myb domain
PfamPF002498.8E-12120164IPR001005SANT/Myb domain
CDDcd001671.54E-9121166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MASSSGIGSL QSPTEWSWYE NKIFELALVE YPEGTPNRWP LITAKLPGKS LGQVLHHYQV  60
LIDDLYLIES GKVEIPDYRD EEEGGNSGDG RCMTPKQHPS DGPNIASGSR QQGQERKKGK  120
PWTEEEHRLF LQGLATHRRG DWKAISRNFV VTRTPAQVAS HAQKFFHRQQ QNQEHQRKSI  180
HDITQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-15186179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026660381.11e-138transcription factor DIVARICATA-like
SwissprotQ8S9H73e-48DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3Q0I0I61e-136A0A3Q0I0I6_PHODC; transcription factor DIVARICATA-like
STRINGXP_008789580.11e-137(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.13e-50MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]