PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s695651g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family G2-like
Protein Properties Length: 441aa    MW: 49326.9 Da    PI: 6.0144
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s695651g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.72.3e-32264318155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r+rWt++LHerFve++++LGG+ekAtPk il+lm+++gLt++hvkSHLQkYR+
  PDK_30s695651g003 264 KTRIRWTQDLHERFVECINRLGGAEKATPKGILKLMNLDGLTIYHVKSHLQKYRI 318
                        68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.013261321IPR017930Myb domain
SuperFamilySSF466891.33E-17262318IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-29263319IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-24264319IPR006447Myb domain, plants
PfamPF002492.2E-8268317IPR001005SANT/Myb domain
PfamPF143797.3E-21349395IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MNTRRINFHD RNDDSLNSSS FELLNPSCGN FTSQQAWNTG FPFQTTSLDC SPRQYAANSS  60
DSSLSSEKGS PQPDFMAPNR SITAPICVGS TPSDFYAAER LMGFPPLEYQ FGTPPLLSKS  120
PGIHLEASHN RPSESYMCVN TVKQSDFGCQ TGDALESITK FPLQESGTSR FSDNTNRFPC  180
RDHQEIELRS LLQSQQSDGY STLDSRHLYS PQGIHDPCVG YNLSNASAAK PSFQPPTEKQ  240
LVKTSVGRPT TPTGVSSGTS VPNKTRIRWT QDLHERFVEC INRLGGAEKA TPKGILKLMN  300
LDGLTIYHVK SHLQKYRIAK YMPESSEGPS QIELNEAGNL MFPYFCSGMQ ITEALQLQLD  360
VQRRLHEQLE IQRNLQLRIE AQGRKLRQMF EQQLKANANL TESQNLENLF PDEQPISLDD  420
DVQILNVEDG SQNTNFPSKI S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-25264321158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-25264321158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-25264321158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-25264321158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-25264321259Protein PHOSPHATE STARVATION RESPONSE 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026659785.10.0myb family transcription factor PHL5-like isoform X1
RefseqXP_026659786.10.0myb family transcription factor PHL5-like isoform X1
TrEMBLA0A3Q0I2720.0A0A3Q0I272_PHODC; myb family transcription factor PHL5-like isoform X1
STRINGXP_008787370.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69333751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.14e-59G2-like family protein