PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s696511g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 191aa    MW: 21033.2 Da    PI: 11.6412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s696511g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.15e-14111163156
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        + y+GVr +++ g+Wv+e+r+p   g + r +l +f t+e+Aa a++  +  l+ge
  PDK_30s696511g001 111 PVYRGVRKRSNGGKWVCEVREP--HG-KSRLWLSTFATPEMAAWAHDVTAIGLHGE 163
                        68****************9996..33.5********************99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-9111162IPR001471AP2/ERF domain
SMARTSM003802.8E-25112176IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-17112171IPR016177DNA-binding domain
PROSITE profilePS5103219.361112170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-25112171IPR001471AP2/ERF domain
CDDcd000184.71E-22113170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MTARRVGQVW PTWRLTIVNS IKQGAEIGHP VSDGVPLWHT EVPCSSITVA ILLWTRKTTP  60
SSPTPPMISP RPSGVPIPSP SYATSSHAPS PSATVLKRRA GRMKFRETRH PVYRGVRKRS  120
NGGKWVCEVR EPHGKSRLWL STFATPEMAA WAHDVTAIGL HGESAKLNFP TPQTPCLEQA  180
QRHRTTSGVL P
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777348.24e-47dehydration-responsive element-binding protein 1F-like
SwissprotQ9FJ933e-32DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A2H3X2K29e-46A0A2H3X2K2_PHODC; dehydration-responsive element-binding protein 1F-like
STRINGXP_008777348.12e-46(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.19e-33C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]