PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s696511g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

ERF

Protein Properties

Length: 199aa MW: 21678.3 Da PI: 6.1572

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s696511g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.5	7.1e-18	59	111	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 + y+GVr++++ g+Wv+e+r+p + r +lg+f t+e+Aa+a++ a+ +l+ge PDK_30s696511g002 59 PVYRGVRRRSNGGKWVCEVREP-----HskSRLWLGSFATPEMAARAHDVAAIALHGE 111 68**************9996.....335************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.7E-12	59	111	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.4E-29	60	120	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.667	60	118	IPR001471	AP2/ERF domain
SMART	SM00380	6.3E-32	60	124	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.9E-20	60	120	IPR016177	DNA-binding domain
CDD	cd00018	4.44E-27	61	120	No hit	No description
PRINTS	PR00367	1.4E-5	61	72	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-5	84	100	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MDLEDDSSVS SSSNDLSPRH PDVPIPPPYS PTSTPAPSPS STMLKRRAGR KKFKETRHPV 60 YRGVRRRSNG GKWVCEVREP HSKSRLWLGS FATPEMAARA HDVAAIALHG ESAKLNFPDS 120 THALPRASTT SPDDIRCAAK EEKAADAASE VFVDEEALFN MPGLVDSMAE GLLLTPPAMQ 180 KGFDWDGAEC HVDLSLWGD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:17136305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269\|PubMed:17136305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008777348.2	1e-116	dehydration-responsive element-binding protein 1F-like
Swissprot	A2WZI4	6e-57	DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
Swissprot	Q8S9Z5	6e-57	DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBL	A0A2H3X2K2	1e-115	A0A2H3X2K2_PHODC; dehydration-responsive element-binding protein 1F-like
STRING	XP_008777348.1	1e-116	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP196	36	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25490.1	5e-47	C-repeat/DRE binding factor 1

Publications ? help Back to Top
Wang Q, et al. Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Mol. Biol., 2008. 67(6): p. 589-602 [PMID:18470484] Liu HH,Wang YG,Wang SP,Li HJ Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses. Genet. Mol. Res., 2015. 14(1): p. 2331-40 [PMID:25867379]