PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s698052g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 218aa MW: 24829.7 Da PI: 9.2964

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s698052g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	86.6	4.6e-27	2	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya...tgkrknratksgyWkatg 87 lppG+ F+Ptde l+ yLk+k+ + +l++ +vi e d+y + P+dL + +++++ ew+fF+++ +k + + +r++r + g+Wkat PDK_30s698052g001 2 LPPGYLFRPTDEVLLIAYLKNKLLQWPLPC-DVIVEGDVYGSRPQDLAlEyPMANKDYEWFFFTSNPRKRSgarETSRASRRAGLGRWKATK 92 79**************************.99**********84235566777****999983333445555567899* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkge.ktdWvmheyrl 128 k+vl+++++++g k+++ + +++ ge k+ W+m+e+++ PDK_30s698052g001 93 GVKKVLDSESTTIGSKQSFCYMEQNWDGGEdKSIWLMEEFSM 134 ******************88666654499*****87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-34	2	163	IPR003441	NAC domain
PROSITE profile	PS51005	34.666	2	163	IPR003441	NAC domain
Pfam	PF02365	8.1E-16	3	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MLPPGYLFRP TDEVLLIAYL KNKLLQWPLP CDVIVEGDVY GSRPQDLALE YPMANKDYEW 60 FFFTSNPRKR SGARETSRAS RRAGLGRWKA TKGVKKVLDS ESTTIGSKQS FCYMEQNWDG 120 GEDKSIWLME EFSMQNLEGR GSAGVIRDTN KLDDWVICKI YLTPKARKAH ADLKQFASPT 180 LEPAAKRRRI EVPYSSPSFL LLLGLLLLDF LPVSFALI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-20	2	161	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-20	2	161	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-20	2	161	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-20	2	161	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	6e-20	2	161	20	166	NAC domain-containing protein 19
3swm_B	6e-20	2	161	20	166	NAC domain-containing protein 19
3swm_C	6e-20	2	161	20	166	NAC domain-containing protein 19
3swm_D	6e-20	2	161	20	166	NAC domain-containing protein 19
3swp_A	6e-20	2	161	20	166	NAC domain-containing protein 19
3swp_B	6e-20	2	161	20	166	NAC domain-containing protein 19
3swp_C	6e-20	2	161	20	166	NAC domain-containing protein 19
3swp_D	6e-20	2	161	20	166	NAC domain-containing protein 19
4dul_A	5e-20	2	161	17	163	NAC domain-containing protein 19
4dul_B	5e-20	2	161	17	163	NAC domain-containing protein 19

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	189	KRRRI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026657805.1	1e-106	NAC domain-containing protein 30-like
TrEMBL	A0A3Q0HWS3	1e-105	A0A3Q0HWS3_PHODC; NAC domain-containing protein 30-like
STRING	XP_008780431.1	1e-136	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP29404	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	3e-24	NAC domain containing protein 47