PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s699271g010
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 243aa    MW: 27717 Da    PI: 5.7365
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s699271g010genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.9e-15855148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT++Ed++lv  v +lG ++W+  a+  g++Rt+k+c++rw +yl
  PDK_30s699271g010  8 KGPWTEQEDLQLVWFVGLLGERRWDFLAKVSGLNRTGKSCRLRWVNYL 55
                       79********************************************97 PP
2Myb_DNA-binding56.56.2e-1861106148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rgr+T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  PDK_30s699271g010  61 RGRMTPQEEHLVLELHAKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 106
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.364355IPR017930Myb domain
SuperFamilySSF466898.99E-286102IPR009057Homeodomain-like
SMARTSM007173.4E-12757IPR001005SANT/Myb domain
PfamPF002493.0E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-18962IPR009057Homeodomain-like
CDDcd001676.93E-81055No hitNo description
PROSITE profilePS5129426.94556110IPR017930Myb domain
SMARTSM007177.9E-1660108IPR001005SANT/Myb domain
PfamPF002493.1E-1661105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2463109IPR009057Homeodomain-like
CDDcd001672.77E-1063106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAKGDTRKGP WTEQEDLQLV WFVGLLGERR WDFLAKVSGL NRTGKSCRLR WVNYLHPGLK  60
RGRMTPQEEH LVLELHAKWG NRWSRIARRL PGRTDNEIKN YWRTHMRKKA QERNRSSPPP  120
SPSSSSSNPS SPLVSDPPSE EAGEGKHELD GVAEGTSSMT WFEENEEGVK GYPMDQIWNE  180
MASSELISEL MSFEGYKNEA CISVSCPSVP SPVWDYCSDS LWKIDDEEFK VLASIGDNTI  240
RES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2581104105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795797.11e-179myb-related protein MYBAS1-like isoform X1
SwissprotQ53NK63e-81MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A2H3YAW81e-177A0A2H3YAW8_PHODC; myb-related protein MYBAS1-like isoform X1
STRINGXP_008795797.11e-178(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-70myb domain protein 48
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]