PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s699271g013

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 164aa MW: 18489.8 Da PI: 10.433

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s699271g013	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00049	29	51	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H PDK_30s699271g013 29 YECKTCNRRFPTFQALGGHRTSH 51 99**********99998888877 PP
2	zf-C2H2	11.2	0.0011	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F+ L H+r+H PDK_30s699271g013 74 HECPVCGLEFPIGQALGGHMRRH 96 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.57E-9	27	96	No hit	No description
Pfam	PF13912	2.0E-12	28	53	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.096	29	51	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.097	29	56	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	31	51	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.9E-10	73	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.14	74	96	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.974	74	110	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	76	96	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MGDLLLLLSC NGAKAQKMNG IEKPMGRVYE CKTCNRRFPT FQALGGHRTS HLRPRIRRNR 60 VEPPKKERPK QRVHECPVCG LEFPIGQALG GHMRRHKPTE AGEVHAEEKA GRKLWPLPIG 120 RCSLELIAII FAGVIYLDFF CFSCLSKSSS RFELVIAPKP LNIS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008795823.1	2e-76	zinc finger protein ZAT11-like
TrEMBL	A0A2H3YAC2	5e-75	A0A2H3YAC2_PHODC; zinc finger protein ZAT11-like
STRING	XP_008795823.1	9e-76	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP501	37	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	1e-25	C2H2 family protein